View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19689_low_12 (Length: 290)
Name: NF19689_low_12
Description: NF19689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19689_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 245; Significance: 1e-136; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 10 - 270
Target Start/End: Complemental strand, 10239934 - 10239674
Alignment:
| Q |
10 |
acatcatcaatatcagcactaatactcaacacactcgatgacattatcaacatcttcatagacccaccaataaaaccatccgtagatccaagacatgttt |
109 |
Q |
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| T |
10239934 |
acatcatcaatctcagcactaatactcaacacactcgatgacatcatcaacaccttcatagacccaccaataaaaccatccgtagatccaagacatgttt |
10239835 |
T |
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| Q |
110 |
tgtcccaaaactttgcaccagtcctagacgaactccctccaacacaatgcaaagtcattaaaggcacacttccaccgtcacttaacggtgtttacataag |
209 |
Q |
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| T |
10239834 |
tgtcccaaaactttgcaccagtccttgacgaactccctccaacacaatgcaaagtcattaaaggcacacttccaccgtcacttaacggtgtttacataag |
10239735 |
T |
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| Q |
210 |
aaacggaccaaaccctcagttccttccacgtggaccttaccatctctttgacggtgacggc |
270 |
Q |
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| T |
10239734 |
aaacggaccaaaccctcagttccttccacgtggaccttaccatctctttgacggtgacggc |
10239674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 10 - 270
Target Start/End: Complemental strand, 10231154 - 10230894
Alignment:
| Q |
10 |
acatcatcaatatcagcactaatactcaacacactcgatgacattatcaacatcttcatagacccaccaataaaaccatccgtagatccaagacatgttt |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10231154 |
acatcatcaatatcagcactaatactcaacacactcgatgacattatcaacaccttcatagacccaccaataaaaccatccgtagatccaagacatgttt |
10231055 |
T |
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| Q |
110 |
tgtcccaaaactttgcaccagtcctagacgaactccctccaacacaatgcaaagtcattaaaggcacacttccaccgtcacttaacggtgtttacataag |
209 |
Q |
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| T |
10231054 |
tgtcccaaaactttgcaccagtcctagacgaactccctccaacacaatgtgtaatcatcaaaggtacactcccgccgtcactttacggtgcttacataag |
10230955 |
T |
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| Q |
210 |
aaacggaccaaaccctcagttccttccacgtggaccttaccatctctttgacggtgacggc |
270 |
Q |
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| T |
10230954 |
aaacggaccaaacccacagttccttccacgtggaccctaccatctctttgacggtgacggc |
10230894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 23 - 266
Target Start/End: Original strand, 10254684 - 10254927
Alignment:
| Q |
23 |
cagcactaatactcaacacactcgatgacattatcaacatcttcatagacccaccaataaaaccatccgtagatccaagacatgttttgtcccaaaactt |
122 |
Q |
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|||||||| || |||||||| |||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10254684 |
cagcactactattcaacacattcgacgacatcatcaacaccttcatagacccaccaataaaaccatccgtagatccaagacatgttttgtcccaaaactt |
10254783 |
T |
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| Q |
123 |
tgcaccagtcctagacgaactccctccaacacaatgcaaagtcattaaaggcacacttccaccgtcacttaacggtgtttacataagaaacggaccaaac |
222 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10254784 |
tgcaccagtccttgacgaactccctccaacacaatgcaaagtcattaaaggcacacttccaccgtcacttaacggtgtttacataagaaacggaccaaac |
10254883 |
T |
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| Q |
223 |
cctcagttccttccacgtggaccttaccatctctttgacggtga |
266 |
Q |
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|| |||||||||||||||||||| ||||| ||||| |||||||| |
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| T |
10254884 |
ccacagttccttccacgtggaccctaccacctcttcgacggtga |
10254927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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