View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19689_low_13 (Length: 279)
Name: NF19689_low_13
Description: NF19689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19689_low_13 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 130 - 279
Target Start/End: Original strand, 35508217 - 35508366
Alignment:
| Q |
130 |
attgtatcttgttgcagatggcaactcaaatatttggagaaatgctttattatcctcaaccagcagaatgtttaactttaacagaatttccttcaccgga |
229 |
Q |
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| T |
35508217 |
attgtatcttgttgcagatggcaactcaaatatttggagaaatgctttattatcctcaaccagcagaatgtttaactttaacagaatttccttcaccgga |
35508316 |
T |
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| Q |
230 |
atcattgaaaaatagagttattatatcaacaaaacctccgaaagaacatt |
279 |
Q |
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| T |
35508317 |
atcattgaaaaatagagttattatatcaacaaaacctccgaaagaacatt |
35508366 |
T |
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Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 35508106 - 35508155
Alignment:
| Q |
19 |
catcttacagaagaacttcgagcgaaatttgcagaagtatgcaatagact |
68 |
Q |
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| T |
35508106 |
catcttacagaagaacttcgagcgaaatttgcagaagtatgcaatagact |
35508155 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 142 - 185
Target Start/End: Original strand, 31652656 - 31652699
Alignment:
| Q |
142 |
tgcagatggcaactcaaatatttggagaaatgctttattatcct |
185 |
Q |
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| T |
31652656 |
tgcagatggcaaatcaaatatttggagaaatgctttattgtcct |
31652699 |
T |
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