View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19689_low_14 (Length: 263)
Name: NF19689_low_14
Description: NF19689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19689_low_14 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 16 - 263
Target Start/End: Complemental strand, 33420362 - 33420115
Alignment:
| Q |
16 |
atattgctgtttatgagaccacaaaaacatcgtaccggaagtcctatgaaacaattggtaggttttcatagtttgttgttagatgcaggggaaatgagcc |
115 |
Q |
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| T |
33420362 |
atattgctgtttatgagaccacaaaaacatcgaaccagaagtcctatgaaacaattggtaggttttcatagtttgttgttagatgcaggggaaatgagcc |
33420263 |
T |
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| Q |
116 |
atgttggatttgagcttagtccttgtgagcatcttagtcgagcgaacgaggctggtttgaagatcatagaagaagggtctcatttgttgcatgtgggtga |
215 |
Q |
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| T |
33420262 |
atgttggatttgagcttagtccttgtgagcatcttagtcgagcgaacgaggctggtttgaagatcatagaagaagggtctcatttgttgcatgtgggtga |
33420163 |
T |
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| Q |
216 |
agaagagtacctaatagatatcactgtttgatgatacatatttattct |
263 |
Q |
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| T |
33420162 |
agaagagtacctaatagatatcattgtttgatgatacatatttattct |
33420115 |
T |
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