View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19689_low_18 (Length: 239)
Name: NF19689_low_18
Description: NF19689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19689_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 41920839 - 41921059
Alignment:
| Q |
1 |
catagagcaaaggcaactgttattggtctactggaggctagtcgagtgaatgaatggattgtcactgagaaacttggagatgctctcaaggctaaagcag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41920839 |
catagagcaaaggcaactgttattggtctactggaggctagtcgagtgaatgaatggattgtcactgagaaacttggagatgctctcaaggctaaagcag |
41920938 |
T |
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| Q |
101 |
ggactaaagcactcaagaagcctcgattcaggattgaagacaggtataaatcagtactattgtcttagttatttggtagcattcaactagttttttaatc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
41920939 |
ggactaaagcactcaagaagcctcgattcaggattgaagacaggtataaattagtactattgtcttagttatttgatagcattcaactagttttttaatc |
41921038 |
T |
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| Q |
201 |
atgattgtgtcacaatcttta |
221 |
Q |
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||||||||||||||||||||| |
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| T |
41921039 |
atgattgtgtcacaatcttta |
41921059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 75; Significance: 1e-34; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 8 - 150
Target Start/End: Complemental strand, 26829904 - 26829762
Alignment:
| Q |
8 |
caaaggcaactgttattggtctactggaggctagtcgagtgaatgaatggattgtcactgagaaacttggagatgctctcaaggctaaagcagggactaa |
107 |
Q |
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|||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||| |||||| | ||| |
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| T |
26829904 |
caaaggcaacgattattggtctactagaggctagtagagtgaatgaatggattgtcactgaaaaacttggagatgctttcaagggtaaagctagtggtaa |
26829805 |
T |
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| Q |
108 |
agcactcaagaagcctcgattcaggattgaagacaggtataaa |
150 |
Q |
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| T |
26829804 |
aggactcaaaaagcttcgatttaggattggagacaggtataaa |
26829762 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 20 - 151
Target Start/End: Complemental strand, 26789376 - 26789245
Alignment:
| Q |
20 |
ttattggtctactggaggctagtcgagtgaatgaatggattgtcactgagaaacttggagatgctctcaaggctaaagcagggactaaagcactcaagaa |
119 |
Q |
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|||||||||| || ||| ||||| ||||||||||||||||||||||||| |||||||||||||||||||||| ||||| || ||||| |||||| || |
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| T |
26789376 |
ttattggtctgctagagactagtagagtgaatgaatggattgtcactgaaaaacttggagatgctctcaagggtaaagatggtggtaaagaactcaaaaa |
26789277 |
T |
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| Q |
120 |
gcctcgattcaggattgaagacaggtataaat |
151 |
Q |
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|| |||||| | |||| ||||||||| |||| |
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| T |
26789276 |
gcttcgatttaaaattgtagacaggtaaaaat |
26789245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 20 - 89
Target Start/End: Complemental strand, 26816206 - 26816137
Alignment:
| Q |
20 |
ttattggtctactggaggctagtcgagtgaatgaatggattgtcactgagaaacttggagatgctctcaa |
89 |
Q |
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||||||||||||| ||| ||||| ||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
26816206 |
ttattggtctactagagactagtagagtgaatgaatggattgtcactgaaaaacttggagatgctctcaa |
26816137 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 5 - 91
Target Start/End: Complemental strand, 26783018 - 26782932
Alignment:
| Q |
5 |
gagcaaaggcaactgttattggtctactggaggctagtcgagtgaatgaatggattgtcactgagaaacttggagatgctctcaagg |
91 |
Q |
| |
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||||||||||||| |||||||| |||| ||| ||||| |||||||||||||||||||||| || ||||||||| ||||||| |||| |
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| T |
26783018 |
gagcaaaggcaacaattattggtatactagagactagtagagtgaatgaatggattgtcacagaaaaacttggaaatgctcttaagg |
26782932 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 91
Target Start/End: Original strand, 2301218 - 2301264
Alignment:
| Q |
45 |
agtgaatgaatggattgtcactgagaaacttggagatgctctcaagg |
91 |
Q |
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|||||||||||||||||||||| | ||||||||| ||||||| |||| |
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| T |
2301218 |
agtgaatgaatggattgtcactaaaaaacttggaaatgctcttaagg |
2301264 |
T |
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