View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19689_low_2 (Length: 693)
Name: NF19689_low_2
Description: NF19689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19689_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 582; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 582; E-Value: 0
Query Start/End: Original strand, 1 - 682
Target Start/End: Complemental strand, 27296363 - 27295697
Alignment:
| Q |
1 |
gtaatggagtcttggtccatgatgtgaccatatcatctcctggtgatagtcctaacactgatggaattcacttacagaactcaagagatgtattgatata |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27296363 |
gtaatggagtcttggtccatgatgtgaccatatcatctcctggtgatagtcctaacactgatggaattcacttacagaactcaagagatgtattgatata |
27296264 |
T |
|
| Q |
101 |
caaaagtactatggcttgcggtaatatttcaattacggataaattattggacatttcgatttatcgaaacaacagttggtaactagtccatgcagaactc |
200 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||||| ||| ||| | |
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| T |
27296263 |
caaaagtactatggcttgcggtaatatttcaattacggataaattattgcacatttctatttatccaaacaacagttggtat-taggccagg-------- |
27296173 |
T |
|
| Q |
201 |
catgttttgaacttttcttaactgttatgcaggagatgattgtatttccatacaaactggatgctcaaacgtatacgtacacaatgtcgactgtggacca |
300 |
Q |
| |
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||||||||||| ||| || |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
27296172 |
-----tttgaacttttttta-ctattatgcaggagatgattgtatttctatacaaactggatgctcaaatgtatacgtacacaatgtcgactgtggacca |
27296079 |
T |
|
| Q |
301 |
gggcatggaatcagcatcggaggtctaggaaaggataatactagagcctgtgtctcaaacatcactgtcagggatgtcaacatgcataacacaatgaatg |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27296078 |
gggcatggaatcagcatcggaggtctaggaaaggataatactagagcctgtgtctcaaacatcactgtcagggatgtcaacatgcataacacaatgaatg |
27295979 |
T |
|
| Q |
401 |
gtgtcagaatcaaaacatggcaggtaaaaaagattcctatatgttcatcaagcttatcagaaaatttaacttcaaaatcatttcataccgataattgaat |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27295978 |
gtgtcagaatcaaaacatggcaggtaaaaaagattcctatatgttcatcaagcttatcagaaaatttaacttcaaaatcatttcataccgataattgaat |
27295879 |
T |
|
| Q |
501 |
cttctctcaaagccaaataattatgattcaatcaaatgctgcaaagctctcattcaatccaaataccttcatcaaattgaatgaaaaatttgatctctaa |
600 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27295878 |
cttctctcaaagccaaataattatgattcaatcaaatgctgcaaagctctcattcaatccaaataccttcatcaaattgaatgaaaaatttgatctctaa |
27295779 |
T |
|
| Q |
601 |
caaattaaataaaaaattatgcagggtggatcaggttcagtacaaggagtactattctcaaacatacaagtttcacaggttc |
682 |
Q |
| |
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| T |
27295778 |
caaattaaataaaaaattatgcagggtggatcaggttcagtacaaggagtactattctcaaacatacaagtttcacaggttc |
27295697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 119; Significance: 2e-60; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 226 - 428
Target Start/End: Original strand, 14738520 - 14738722
Alignment:
| Q |
226 |
tatgcaggagatgattgtatttccatacaaactggatgctcaaacgtatacgtacacaatgtcgactgtggaccagggcatggaatcagcatcggaggtc |
325 |
Q |
| |
|
||||||||||||||||| ||||| |||||||||||||||||||| ||||| |||||||||||| ||||||| || || |||||||||||||| ||| || |
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| T |
14738520 |
tatgcaggagatgattgcatttctatacaaactggatgctcaaatgtatatgtacacaatgtcaactgtggtccgggacatggaatcagcattggaagtt |
14738619 |
T |
|
| Q |
326 |
taggaaaggataatactagagcctgtgtctcaaacatcactgtcagggatgtcaacatgcataacacaatgaatggtgtcagaatcaaaacatggcaggt |
425 |
Q |
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||||||| ||||| || |||||||||||||||||||| |||||||| ||||||||||| || || ||||||||||||| |||||||||||||||||||| |
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| T |
14738620 |
taggaaaagataacaccagagcctgtgtctcaaacattactgtcagagatgtcaacatacacgactcaatgaatggtgttagaatcaaaacatggcaggt |
14738719 |
T |
|
| Q |
426 |
aaa |
428 |
Q |
| |
|
||| |
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|
| T |
14738720 |
aaa |
14738722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 620 - 675
Target Start/End: Original strand, 14739019 - 14739074
Alignment:
| Q |
620 |
tgcagggtggatcaggttcagtacaaggagtactattctcaaacatacaagtttca |
675 |
Q |
| |
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||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||| |
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|
| T |
14739019 |
tgcagggtggatctggttcagtacagggagtattattctcaaacatacaagtttca |
14739074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 97
Target Start/End: Original strand, 14737717 - 14737796
Alignment:
| Q |
18 |
catgatgtgaccatatcatctcctggtgatagtcctaacactgatggaattcacttacagaactcaagagatgtattgat |
97 |
Q |
| |
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|||||||||| || ||||||||||||||||| ||||| || |||||||||||| | ||||| || | |||||| ||||| |
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| T |
14737717 |
catgatgtgagtatttcatctcctggtgatagccctaataccgatggaattcaccttcagaattccaaagatgtgttgat |
14737796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 76
Target Start/End: Original strand, 865581 - 865624
Alignment:
| Q |
33 |
tcatctcctggtgatagtcctaacactgatggaattcacttaca |
76 |
Q |
| |
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||||| |||||||||||||||||||| |||||||||||| |||| |
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| T |
865581 |
tcatcacctggtgatagtcctaacacagatggaattcacctaca |
865624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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