View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19689_low_4 (Length: 606)
Name: NF19689_low_4
Description: NF19689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19689_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 516; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 15 - 585
Target Start/End: Complemental strand, 26099994 - 26099426
Alignment:
| Q |
15 |
aatatgttcagattggaatgtcaaggaattcaacatgaattttaggagctccgtgttagaagctgtatgaaagatctgccagaggtcttccaaactggca |
114 |
Q |
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| T |
26099994 |
aatatgttcagattggaatgtca--gaatttaacatgaattttaggagctctgtgttacaagctgtatgaaagatctgccagaggtcttccaaactggca |
26099897 |
T |
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| Q |
115 |
gtgactgagagttgcaaaagatctgccaaggtatatgagagaatagaatagaataggagagatggtgattcacttgaaatcagtataagacatagatgaa |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
26099896 |
gtgactgagagttgcaaaagatctgccaaggtatatgagagaatagaatagaatagaagagacggtgattcacttgaaatcagtataagacatagatgaa |
26099797 |
T |
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| Q |
215 |
ttcatgcgtacatgtgttagagcccagtaaaatgtatacataggctattttgtaatgattttgtatcactatctaagcatgtcttctcctttggcatgtg |
314 |
Q |
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||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26099796 |
ttcatgcgtacatgtgtaatagcccagtaaaatgtatacataggctattttgtaatgattttgtatcactatctaagcatgtcttctcctttggcatgtg |
26099697 |
T |
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| Q |
315 |
gtagttaataaaatctgctttgcttttccaaaataacttagaattgcttgattactttgttacgagtcctaccgtaccaaattaagttcaatgaatttag |
414 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |
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| T |
26099696 |
gtagttaataaaatctgctttgctttaccaaaataacttagaattgcttgattactttgttacgagtcctaccataccaaattaggttcaatgaatttag |
26099597 |
T |
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| Q |
415 |
aaactttatactcaaatgatgctaatcaccatctcaaatcgtgctcagagttctgcccggttaagtgataccggggagctacattccgaagcattcccca |
514 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
26099596 |
aaactttatactcaaatgatgctaatcaccatctcaaatcgtgctcagagttctgccctgttaagtgataccggggagctacattccgaagcattcccca |
26099497 |
T |
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| Q |
515 |
caaaatctatatttaccatccccaccaaaatctggcagaaatgtgtcggagcctcagtcaagattccgaag |
585 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26099496 |
caaaatctatatttaccatccccaccaaaatctggcagaaatgtgtcggagcctcagtcaagattccgaag |
26099426 |
T |
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