View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19689_low_5 (Length: 570)
Name: NF19689_low_5
Description: NF19689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19689_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 8 - 555
Target Start/End: Original strand, 23948876 - 23949442
Alignment:
| Q |
8 |
aagcaaagggcaataatgtcactttctccttctgattatctagggtctttcttctacaccgcaaacatatgaatggcatggtggcttaacacagcagtga |
107 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
23948876 |
aagcaaagggcaataatgtcactttctccttctgattatctagggtctttcttctacaccgcaaacatatgaacggcatggtggcttaacacagcagtga |
23948975 |
T |
|
| Q |
108 |
gaagaattttttcatctattcatcttgtttcgtattaatgaaagnnnnnnnnttaggagaaaaatcaga----------------------tatatgaat |
185 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||| || |
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|
| T |
23948976 |
gaagaattttttcatctattcatcttgtttcgtattattgaaagaaaaaaaattaggagaaaaatcagatatatgtgtgtgtgtgtgtgtatatatatat |
23949075 |
T |
|
| Q |
186 |
atatataattataatcaaatttattattcagatggaaaccttcatctgtatattcatgtgtctgaaactaaacaataaattaataataaaatcaacacaa |
285 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23949076 |
atatatatatataatcaaatttattattcagatggaaaccttcatctgtatattcatgtgtctgaaactaaacaataaattaataataaaatcaacacaa |
23949175 |
T |
|
| Q |
286 |
tttggaaacagtaacaaaaccaaagccctacaattctcagaagatatcaatgaatcgaaaa-tagaaagagcgagagagaaagagaacctggcgttattg |
384 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |
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| T |
23949176 |
tttggaaacagtaataaaaccaaagccctacaattctcagaagatatcaatgaatcgaaaaatagaaagagcgagagaga----gaacctggcgttattg |
23949271 |
T |
|
| Q |
385 |
aatcggtggcaccgtataatacgatacaattagcaatggattgtttcttgaatttgaattcagatcaataatctttgaatcagtttgtgaaagtccgatt |
484 |
Q |
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|||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
23949272 |
aatcggtggcaccgtataataccatacaattagcaaaggattgtttcttgaatttgaattcagatcaataatctttgaatcggtttgtgaaagtccgatt |
23949371 |
T |
|
| Q |
485 |
ctatgctaaagtcgatgaaattgctagagaggatagacaatctcgataggttgttttgagaatgtgaaagt |
555 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23949372 |
ctatgctaaagtcgatgaaattgctagagaggatagacaatctcgataggttgttttgagaatgtgaaagt |
23949442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 401; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 8 - 555
Target Start/End: Complemental strand, 16109290 - 16108727
Alignment:
| Q |
8 |
aagcaaagggcaataatgtcactttctccttctgattatctagggtctttcttctacaccgcaaacatatgaatggcatggtggcttaacacagcagtga |
107 |
Q |
| |
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||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |
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| T |
16109290 |
aagcaaagggcaataatgtcaatttgtccttctgattatctagggtctttcttctacaccgcaaacatatgaatgacatggtggcttgacacagcagtga |
16109191 |
T |
|
| Q |
108 |
gaagaattttttcatctattcatcttgtttcgtattaatgaaagnnnnnnnn-ttaggagaaaaatcagatatatgaatatatataattataatcaaatt |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
16109190 |
gaagaattttttcatctattcatcttgtttcgtattattgaaagaaaaaaaaattaggagaaaaatcagatatatgtatatatataattataatcaaatt |
16109091 |
T |
|
| Q |
207 |
tattattcagatggaaaccttcatctgtatattcatgtgtctgaaactaaacaataaattaataataaaatcaacacaatttggaaacagtaacaaaacc |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16109090 |
tattattcagatggaaaccttcatctgtattttcatgtgtctgaaactaaacaataaattaataataaaatcaacacaatttggaaacagtaacaaaacc |
16108991 |
T |
|
| Q |
307 |
aaagccctacaattctcagaagatatcaatgaatcg-aaaatagaaagagc------gagagagaaagagaacctggcgttattgaatcggtg------- |
392 |
Q |
| |
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| |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||| |||||||||||| ||| |
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| T |
16108990 |
atagccctacaattctcagaagatatcaatgaatcgaaaaatagaaagagcgagagagagagagagagagaacctgacgttattgaatcagtggttagtt |
16108891 |
T |
|
| Q |
393 |
---gcaccgtataatacgatacaattagcaatggattgtttcttgaatttgaattcagatcaataatctttgaatcagtttgtgaaagtccgattctatg |
489 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
16108890 |
taagcaccgtataatacgatacaattagcaaaggattgtttcttgaatttgaattcagatcaataatctttgaatcggtttgtgaaagtccgattctatg |
16108791 |
T |
|
| Q |
490 |
ctaaagtcgatgaaattgctagagaggatagacaatctcgataggttgttttgagaatgtgaaagt |
555 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
16108790 |
ctaaagtcgatgaaattgct--agaggatagacaatctcgatagattgttttgagaatgtgaaagt |
16108727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 184 - 228
Target Start/End: Complemental strand, 33854557 - 33854513
Alignment:
| Q |
184 |
atatatataattataatcaaatttattattcagatggaaaccttc |
228 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| |||||||| |
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|
| T |
33854557 |
atatatataattagaatcaaatttattattcagatgtaaaccttc |
33854513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 33926365 - 33926409
Alignment:
| Q |
184 |
atatatataattataatcaaatttattattcagatggaaaccttc |
228 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| |||||||| |
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|
| T |
33926365 |
atatatataattagaatcaaatttattattcagatgtaaaccttc |
33926409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 253 - 328
Target Start/End: Complemental strand, 33854513 - 33854438
Alignment:
| Q |
253 |
ctaaacaataaattaataataaaatcaacacaatttggaaacagtaacaaaaccaaagccctacaattctcagaag |
328 |
Q |
| |
|
||||||||| ||| ||||| |||||||||||| |||||||| | || ||||| |||||||||| |||| ||||||| |
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|
| T |
33854513 |
ctaaacaatgaatcaataagaaaatcaacacagtttggaaataataccaaaaacaaagccctaaaattttcagaag |
33854438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 253 - 328
Target Start/End: Original strand, 33926409 - 33926484
Alignment:
| Q |
253 |
ctaaacaataaattaataataaaatcaacacaatttggaaacagtaacaaaaccaaagccctacaattctcagaag |
328 |
Q |
| |
|
||||||||| ||| ||||| |||||||||||| |||||||| | || ||||| |||||||||| |||| ||||||| |
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|
| T |
33926409 |
ctaaacaatgaatcaataagaaaatcaacacagtttggaaataataccaaaaacaaagccctaaaattttcagaag |
33926484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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