View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19689_low_6 (Length: 482)
Name: NF19689_low_6
Description: NF19689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19689_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 443; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 1 - 466
Target Start/End: Complemental strand, 37054725 - 37054257
Alignment:
| Q |
1 |
aaaggcaaggtgagtttaaatccaggactagatctgttctatcttgatgcattaggtgaagatgttgaacaacatgcttgtactttgacaaagactagtg |
100 |
Q |
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| T |
37054725 |
aaaggcaaggtgagtttaaatccaggactagatctgttctatcttgatgcattaggtgaagatgttgaacaacatgcttgtactttgacaaagactagtg |
37054626 |
T |
|
| Q |
101 |
acaataatgttagtagttcttttactaaggaaattgtttctgttcatgaagaaaaactagtaa---aaaatgaacatgaatgtgttgataaaattgttca |
197 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
37054625 |
acaataatgttagtagttcttttactaaggaaattgtttctgttcatgaagaagaactagtaataaaaaatgaacatgaatgtgttgataaaattgttca |
37054526 |
T |
|
| Q |
198 |
tgaagattgtgattcatcagaagatgaaagctttcattcatttgttgattcacaatcaaatacaagactttctaatgcttcagctggtagcctaagtgac |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37054525 |
tgaagattgtgattcatcagaagatgaaagctttcattcatttgttgattcacaatcaaatacaagactttctaatgcttcagctggtagcctaagtgac |
37054426 |
T |
|
| Q |
298 |
acacaatctttgttattgtcaccgcaaaattcattttcattattaccaaaccaattacctagttctccacaaaacacaaatgattctcaccaaccacctt |
397 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37054425 |
acacaatctttgttattgtcacctcaaaattcattttcattattaccaaaccaattacctagttctccacaaaacacaaatgattctcaccaaccacctt |
37054326 |
T |
|
| Q |
398 |
atagtccaaaacaaaaagaccaagagattgaaaatgaaacctttgtccaatgtccacaaacatctaatt |
466 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37054325 |
atagtccaaaacaaaaagaccaagatattgaaaatgaaacctttgtccaatgtccacaaacatctaatt |
37054257 |
T |
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