View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19689_low_8 (Length: 416)
Name: NF19689_low_8
Description: NF19689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19689_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 41 - 404
Target Start/End: Original strand, 30212485 - 30212848
Alignment:
| Q |
41 |
gtactaggaagagtcacataaatctacatgggtttggaaagtaataatgctatctctctgcgaatatgtgtttatactccttgtctgaccttttgcaatt |
140 |
Q |
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| T |
30212485 |
gtactaggtagagtcacataaatctacatgtgtttggaaagtaataatgctatctctctgcgaatatgtgtttatactccttgtctgaccttttgcaatt |
30212584 |
T |
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| Q |
141 |
caaatttaaaacaagaccaaagagaaatgactcatcatgatcttgctcctcaaactgcaagaattaatcttttggttgatcattcctttaaaactttaaa |
240 |
Q |
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| T |
30212585 |
caaatttaaaacaagaccaaagagaaatgactcatcatgatcttgctcctcaaactgcaagaattaatcttttggttgatcattcctttaaaactttaaa |
30212684 |
T |
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| Q |
241 |
attggagcctaattttctctttctgtgaaacaaagttagtcaagctagcaagtatnnnnnnngtgagatgtttagccatatcaacgtttcgaagtatgaa |
340 |
Q |
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| T |
30212685 |
attggagcctaattttctctttctgtgaaacaaagttagtcaagctagcaagtatagaaaaagtgagatgtttagccatatcaacgtttcgaagtatgaa |
30212784 |
T |
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| Q |
341 |
ttggaaaagcattaaatacttgtgcactcaatcgaataagctagcttcatgcatgttgtttatg |
404 |
Q |
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| T |
30212785 |
ttggaaaagcactaaatacttgtgcactcaatcgaataagctagcttcatgcatgttgtttatg |
30212848 |
T |
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Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 211 - 288
Target Start/End: Original strand, 17378145 - 17378224
Alignment:
| Q |
211 |
tttggttgatcattcctttaaaacttta--aaattggagcctaattttctctttctgtgaaacaaagttagtcaagctag |
288 |
Q |
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| T |
17378145 |
tttggttgatcattcctaaaaaactttataaaattggaggctaattatctgtttctgttaaacaaagatagtcaatctag |
17378224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 117 - 189
Target Start/End: Original strand, 19808313 - 19808385
Alignment:
| Q |
117 |
ctccttgtctgaccttttgcaattcaaatttaaaacaagaccaaagagaaatgactcatcatgatcttgctcc |
189 |
Q |
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| T |
19808313 |
ctccttgactgaccttttgcaatatgaatttaaaacaaaaccaaagagaaatgacttgtcttgatcgtgctcc |
19808385 |
T |
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