View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19689_low_9 (Length: 411)
Name: NF19689_low_9
Description: NF19689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19689_low_9 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 5 - 392
Target Start/End: Original strand, 23992672 - 23993043
Alignment:
| Q |
5 |
atgaaatgagaaatatacaaaacaataattaattaaaatggaacgtgacaaatttacctataaaaagaagtagcactaaattgagggaaagcaannnnnn |
104 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23992672 |
atgaaaggagaaatatacaaaacaataattaattaaaatggaacgtgacaaatttacctataaaaagaagtagcactaaattgagggaaagcaaacacac |
23992771 |
T |
|
| Q |
105 |
nnnnnnnntccatcaaagcatagcaataagccaaaaaacaaagaaagatacaaacatgagttcctataccaatggcaatggcaatggcaatgggaaagtg |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
23992772 |
acac----tccatcaaagcatagcaataagccaaaaaacaaacaaagatacaaacatgagttcctataccaat------------ggcaatgggaaagtg |
23992855 |
T |
|
| Q |
205 |
aacaatggtgacagtagtgatacactctctgctatggtgttaggttctgttatggttcttcctgcagttcttaatgctgcaattgagctcaaaatatttg |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |
|
|
| T |
23992856 |
aacaatggtgacagtagtgatacactctctgctatggtgttaggttctgttatggttcttcctgcagttcttaatgctgcaattgaactcaaattatttg |
23992955 |
T |
|
| Q |
305 |
atatcattgctaccagcaatgatggatttatgtctgtctttgaaattgcttcaaagttaccaaatcaacactccgacttaccaaatag |
392 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
23992956 |
atatcattgctaccagcaatgatggatttatgtctgtctttgaaattgcttcaaacttaccaaatcaacactccgacttaccaaatag |
23993043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 213 - 392
Target Start/End: Complemental strand, 20721317 - 20721141
Alignment:
| Q |
213 |
tgacagtagtgatacactctctgctatggtgttaggttctgttatggttcttcctgcagttcttaatgctgcaattgagctcaaaatatttgatatcatt |
312 |
Q |
| |
|
|||||||||| ||||||| |||||||||| |||||||| ||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
20721317 |
tgacagtagtaatacacttcctgctatggttctaggttctactatggtttttcctgcaattcttaatgctgcaattgagctcaaattatttgatatcatt |
20721218 |
T |
|
| Q |
313 |
gctaccagcaatgatggatttatgtctgtctttgaaattgcttcaaagttaccaaatcaacactccgacttaccaaatag |
392 |
Q |
| |
|
||| || |||| |||||||||||| | || |||||||||| ||||||||||| |||||||||||| ||||||||||| |
|
|
| T |
20721217 |
gct---agtaatggtggatttatgtcggcctacgaaattgctttaaagttaccaactcaacactccgatttaccaaatag |
20721141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 263 - 392
Target Start/End: Complemental strand, 3299626 - 3299494
Alignment:
| Q |
263 |
ttcctgcagttcttaatgctgcaattgagctcaaaatatttgatatcattgctacc---agcaatgatggatttatgtctgtctttgaaattgcttcaaa |
359 |
Q |
| |
|
|||||||||||||||| || |||||||| ||||| | ||||| |||||||||| || |||| || || ||||| | |||||||||||||||||| |
|
|
| T |
3299626 |
ttcctgcagttcttaacgccgcaattgaactcaacttgtttgaaatcattgctaaggaaagtaatggtgatttcatgtcagcctttgaaattgcttcaaa |
3299527 |
T |
|
| Q |
360 |
gttaccaaatcaacactccgacttaccaaatag |
392 |
Q |
| |
|
|||||||| ||||||||| ||||| |||||||| |
|
|
| T |
3299526 |
gttaccaactcaacactctgacttgccaaatag |
3299494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 222 - 367
Target Start/End: Complemental strand, 3362021 - 3361873
Alignment:
| Q |
222 |
tgatacactctctgctatggtgttaggttctgttatggttcttcctgcagttcttaatgctgcaattgagctcaaaatatttgatatcattgcta---cc |
318 |
Q |
| |
|
||||||||||||||||||||| | ||| | |||||| |||||||||||||||| ||||||||||| ||| | |||||||||||||||||| |
|
|
| T |
3362021 |
tgatacactctctgctatggtacttggtgcaaatatggtgtttcctgcagttcttaacgctgcaattgaactccatttatttgatatcattgctaaggaa |
3361922 |
T |
|
| Q |
319 |
agcaatgatggatttatgtctgtctttgaaattgcttcaaagttaccaa |
367 |
Q |
| |
|
|| |||| |||||| ||||| ||||||||||||||||||| |||||| |
|
|
| T |
3361921 |
agtaatggtggattcatgtcatcctttgaaattgcttcaaagctaccaa |
3361873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 222 - 392
Target Start/End: Complemental strand, 3372772 - 3372599
Alignment:
| Q |
222 |
tgatacactctctgctatggtgttaggttctgttatggttcttcctgcagttcttaatgctgcaattgagctcaaaatatttgatatcattgcta---cc |
318 |
Q |
| |
|
||||||||||||||||||||| | ||| | |||||| |||||||||||||||| ||||||||||| ||||| ||||||| ||||| |||| |
|
|
| T |
3372772 |
tgatacactctctgctatggtacttggtgcaaatatggtgtttcctgcagttcttaacgctgcaattgaactcaatttatttgacatcatagctaatgaa |
3372673 |
T |
|
| Q |
319 |
agcaatgatggatttatgtctgtctttgaaattgcttcaaagttaccaaatcaacactccgacttaccaaatag |
392 |
Q |
| |
|
|| |||| |||||| ||||| ||||||||||||||||||| |||||| ||||| || || ||||| ||||| |
|
|
| T |
3372672 |
agtaatggtggattcatgtcatcctttgaaattgcttcaaagctaccaacacaacattctgatttaccgaatag |
3372599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 316
Target Start/End: Complemental strand, 3390889 - 3390836
Alignment:
| Q |
263 |
ttcctgcagttcttaatgctgcaattgagctcaaaatatttgatatcattgcta |
316 |
Q |
| |
|
||||||||||| |||| ||||||||||| ||||| | |||||||||||||||| |
|
|
| T |
3390889 |
ttcctgcagtttttaaagctgcaattgaactcaacttgtttgatatcattgcta |
3390836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University