View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1968_1D_high_1 (Length: 779)
Name: NF1968_1D_high_1
Description: NF1968_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1968_1D_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 689; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 689; E-Value: 0
Query Start/End: Original strand, 1 - 725
Target Start/End: Complemental strand, 23333319 - 23332595
Alignment:
| Q |
1 |
ttaaaattaagctgagcaccagattttaattaaccaacgtaaattttgcagcattaattaactcaaaaaggtttgcgtggaaaatagatgtttgttcttc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23333319 |
ttaaaattaagctgagcaccagattttaattaaccaacgtaaattttgcagcattaattaactcaaaaaggtttgcgtggaaaatagatgtttgttcttc |
23333220 |
T |
|
| Q |
101 |
tctattttgctggccacatgttgttttgaatattaggcgatggttttaatttggctacttttggaatgtaatgctacgaagacttatttgtttcttggtg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |
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| T |
23333219 |
tctattttgctggccacatgttgttttgaatattaggcgatggttttaatttggctacttttggaaagtaatgctatgaagacttatttgtttcttggtg |
23333120 |
T |
|
| Q |
201 |
cattttctgaaagttatacaatacttacgctgatatttcttggttgtcaagttaggatcaagactgtcaattatcattcatgctatgtagttagtcggtt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23333119 |
cattttctgaaagttatacaatacttacgctgatatttcttggttgtcaagttaggatcaagactgtcaattatcattcatgctatgtagttagtcggtt |
23333020 |
T |
|
| Q |
301 |
cattagtgggcattgcactgttttggtatgttgattggaactaaccgtgtcatgtgtttgatgtgttggtcagccgaagacaaggttgccatcgtgtttc |
400 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23333019 |
catttgtgggcattgcactgttttggtatgttgattggaactaaccgtgtcatgtgtttgatgtgttggtcagccgaagacaaggttgccatcgtgtttc |
23332920 |
T |
|
| Q |
401 |
gccaaggaatatggtgtgcatgttgatgattatgtcatgttgcgtgatccaaacagaaacatgttcgaggtcaaggtccacgtgaaaaatggcaaggtct |
500 |
Q |
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| T |
23332919 |
gccaaggaatatggtttgcatgttgatgattatgtcatgttgcgtgatccaaacagaaacatgttcaaggtcaaggtccacgtgaaaaatggcaaggttt |
23332820 |
T |
|
| Q |
501 |
atctgcgggatggttgggctgagctgaagggtttctataaggtagatcgtggtgcgtgggtcaccctgacttatgtacagccgaatcttctagatatgac |
600 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
23332819 |
atctgcgggatggttgggctgagctgaagggtttctataaggtagatcgtggtgcgtgggtcaccctgacgtatgtacagccgaatcttctagatatgac |
23332720 |
T |
|
| Q |
601 |
tatcgcagagagatcaggagtcgaaatcaactatcctaacaaatttcttcctcccatgtcgaaaatgattgtccaacgtgagggtggatcggtcatgcgc |
700 |
Q |
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| T |
23332719 |
tatcgcagagagatcaggagtcgaaatcaactatcctaacaaatttcttcctcccatgtcgaaaatgattgtcccacgtgagggtggatcggtcatgcgc |
23332620 |
T |
|
| Q |
701 |
ttctatcgctcattcgtccacatat |
725 |
Q |
| |
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|||||||||||||||||||| |||| |
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| T |
23332619 |
ttctatcgctcattcgtccatatat |
23332595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 404 - 498
Target Start/End: Original strand, 10955074 - 10955166
Alignment:
| Q |
404 |
aaggaatatggtgtgcatgttgatgattatgtcatgttgcgtgatccaaacagaaacatgttcgaggtcaaggtccacgtgaaaaatggcaaggt |
498 |
Q |
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|||||||||||| |||| |||||||| |||||||| |||||||||| |||| |||||||||||||| ||||||||| ||| || |||||||| |
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| T |
10955074 |
aaggaatatggtttgcacgttgatgactatgtcat--tgcgtgatcctaacaagaacatgttcgaggttaaggtccacaagaagaagggcaaggt |
10955166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 720 - 762
Target Start/End: Complemental strand, 23322373 - 23322331
Alignment:
| Q |
720 |
acatatgcgtttggattttacaacgattgtgtttggtgatgtc |
762 |
Q |
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| T |
23322373 |
acatatgcgtttggagtttacaacgtttgtgtttggtgatgtc |
23322331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 720 - 762
Target Start/End: Complemental strand, 23332540 - 23332498
Alignment:
| Q |
720 |
acatatgcgtttggattttacaacgattgtgtttggtgatgtc |
762 |
Q |
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| T |
23332540 |
acatatgcgtttggagtttacaacgtttgtgtttggtgatgtc |
23332498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 431 - 498
Target Start/End: Complemental strand, 2027759 - 2027692
Alignment:
| Q |
431 |
tatgtcatgttgcgtgatccaaacagaaacatgttcgaggtcaaggtccacgtgaaaaatggcaaggt |
498 |
Q |
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|||||||| |||||||||||||||| |||||||| ||||| || || ||| ||||||||||||||| |
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| T |
2027759 |
tatgtcattttgcgtgatccaaacaagaacatgtttgaggttaaagttcacaagaaaaatggcaaggt |
2027692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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