View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1968_1D_high_13 (Length: 364)

Name: NF1968_1D_high_13
Description: NF1968_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1968_1D_high_13
NF1968_1D_high_13
[»] chr3 (4 HSPs)
chr3 (37-342)||(9827979-9828287)
chr3 (195-280)||(1723224-1723309)
chr3 (61-124)||(9828866-9828929)
chr3 (273-335)||(1542165-1542227)
[»] chr6 (3 HSPs)
chr6 (62-297)||(10457790-10458025)
chr6 (253-297)||(6421632-6421676)
chr6 (294-339)||(10458053-10458098)
[»] chr5 (6 HSPs)
chr5 (93-224)||(38225284-38225414)
chr5 (62-224)||(38231809-38231974)
chr5 (87-303)||(35891761-35891976)
chr5 (185-314)||(38226118-38226247)
chr5 (183-283)||(35891590-35891690)
chr5 (303-339)||(19827920-19827956)
[»] chr8 (2 HSPs)
chr8 (205-305)||(7000723-7000823)
chr8 (294-339)||(33113229-33113274)
[»] chr7 (3 HSPs)
chr7 (99-172)||(2179553-2179626)
chr7 (294-342)||(20268884-20268932)
chr7 (205-305)||(47304123-47304223)
[»] chr4 (4 HSPs)
chr4 (205-293)||(30783513-30783601)
chr4 (253-297)||(51538003-51538047)
chr4 (234-297)||(51537349-51537412)
chr4 (253-293)||(20447189-20447229)
[»] chr1 (1 HSPs)
chr1 (193-296)||(12657887-12657990)


Alignment Details
Target: chr3 (Bit Score: 263; Significance: 1e-146; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 37 - 342
Target Start/End: Complemental strand, 9828287 - 9827979
Alignment:
Q  37 tatgtatgtatgtatgcatgtattcattctaacccatagtagtataactagttgtcagtttcatgtgcataaactaggataataagtgaaaactgcaact 136  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  9828287 tatgtatgtatgtatgcatgtattcattctaacccatagtagtataactagttgtcagtttcatgtgcataaactaggataataagtgaaaaatgcaact 9828188  T
Q  137 tactctgattgtgactagttgcaacttaagtgttggnnnnnnnn---ttatttactctcttaaacatattattttagtttttaacatttatctgactttg 233  Q
    ||||||||||||||||||||||||||||||||||||           |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9828187 tactctgattgtgactagttgcaacttaagtgttggaaaaaaaaaatttatttactctcttaaacatattattttagtttttaacatttatctgactttg 9828088  T
Q  234 tcagggattatattgttatataagataaataattcagggatcgatttgattttgagtgacataactcaaggatcgatttgacagtgtgtcaatttgtaat 333  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  9828087 tcagggattatattgttatataagataaataattcagggatcgatttgattttgagtgacataactcaaggatcgatttgacagtgtatcaatttgtaat 9827988  T
Q  334 gacttttgt 342  Q
    |||||||||    
T  9827987 gacttttgt 9827979  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 195 - 280
Target Start/End: Complemental strand, 1723309 - 1723224
Alignment:
Q  195 aaacatattattttagtttttaacatttatctgactttgtcagggattatattgttatataagataaataattcagggatcgattt 280  Q
    |||||||||||||||||||||| ||||||| ||||  | ||| |||| |  ||| |||||||||||||||  ||||||||||||||    
T  1723309 aaacatattattttagtttttagcatttatttgacagtatcaaggatcaatttgatatataagataaatacgtcagggatcgattt 1723224  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 61 - 124
Target Start/End: Original strand, 9828866 - 9828929
Alignment:
Q  61 cattctaacccatagtagtataactagttgtcagtttcatgtgcataaactaggataataagtg 124  Q
    |||||||||||||||||||| | |  ||||| ||||  |||||||||||||| |||||||||||    
T  9828866 cattctaacccatagtagtagagcatgttgtgagttctatgtgcataaactatgataataagtg 9828929  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 335
Target Start/End: Original strand, 1542165 - 1542227
Alignment:
Q  273 atcgatttgattttgagtgacataactcaaggatcgatttgacagtgtgtcaatttgtaatga 335  Q
    ||||||||||| ||||||||||||| ||| |||| ||||||| | |||  |||||||||||||    
T  1542165 atcgatttgatattgagtgacataattcagggattgatttgatattgtaacaatttgtaatga 1542227  T

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Target: chr6 (Bit Score: 89; Significance: 8e-43; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 62 - 297
Target Start/End: Original strand, 10457790 - 10458025
Alignment:
Q  62 attctaacccatagtagtataactagttgtcagtttcatgtgcataaactaggataataagtgaaaactgcaacttactctgattgtgactagttgcaac 161  Q
    |||||||| |||||||||| | |  ||||| ||||  ||||||||||||||||||||||| |||||| || |||||| |||||||||||| |||||||||    
T  10457790 attctaactcatagtagtagagcaggttgtgagttctatgtgcataaactaggataataaatgaaaaatgtaacttattctgattgtgacaagttgcaac 10457889  T
Q  162 ttaagtgttggnnnnnnnnttatttactctc-ttaaacatattattttagtttttaacatttatctgactttgtcagggattatattgttatataagata 260  Q
    |||||||||||         ||||||||||| ||||||| ||| |||||||||||||||||||| ||||  | |||| ||| |||||  || ||||||||    
T  10457890 ttaagtgttggaaaaagac-tatttactctctttaaacacattcttttagtttttaacatttatttgacagtctcagagatcatattaatagataagata 10457988  T
Q  261 aataattcagggatcgatttgattttgagtgacataa 297  Q
    ||||||| |||||||||||||||  ||||||||||||    
T  10457989 aataatttagggatcgatttgataatgagtgacataa 10458025  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 297
Target Start/End: Complemental strand, 6421676 - 6421632
Alignment:
Q  253 ataagataaataattcagggatcgatttgattttgagtgacataa 297  Q
    ||||||||||||||| |||||||||||||||  ||||||||||||    
T  6421676 ataagataaataatttagggatcgatttgatagtgagtgacataa 6421632  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 339
Target Start/End: Original strand, 10458053 - 10458098
Alignment:
Q  294 ataactcaaggatcgatttgacagtgtgtcaatttgtaatgacttt 339  Q
    |||| |||| |||||||||||||||||  |||||||||||||||||    
T  10458053 ataattcaacgatcgatttgacagtgtaacaatttgtaatgacttt 10458098  T

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Target: chr5 (Bit Score: 63; Significance: 3e-27; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 93 - 224
Target Start/End: Complemental strand, 38225414 - 38225284
Alignment:
Q  93 agtttcatgtgcataaactaggataataagtgaaaactgcaacttactctgattgtgactagttgcaacttaagtgttggnnnnnnnnttatttactctc 192  Q
    |||||||||||||||||||||||||||||||  ||| | ||||||| |||||||||||| ||||||||||||| ||||||        ||||||||||||    
T  38225414 agtttcatgtgcataaactaggataataagtagaaaatacaacttattctgattgtgaccagttgcaacttaaatgttgg-aaaaatgttatttactctc 38225316  T
Q  193 ttaaacatattattttagtttttaacatttat 224  Q
    ||||| | ||| ||||||||||||||||||||    
T  38225315 ttaaatacattcttttagtttttaacatttat 38225284  T

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Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 62 - 224
Target Start/End: Complemental strand, 38231974 - 38231809
Alignment:
Q  62 attctaacccatagtagtataactagttgtcagtttcatgtgcataaactaggata---ataagtgaaaactgcaacttactctgattgtgactagttgc 158  Q
    ||||||||||||||||||| | |  ||||| ||||| ||||||||| |||||||||   ||||||  ||| ||||||||| ||| | |||||| |||| |    
T  38231974 attctaacccatagtagtagagcaggttgtgagttttatgtgcatacactaggataattataagtagaaaatgcaacttattcttactgtgaccagtttc 38231875  T
Q  159 aacttaagtgttggnnnnnnnnttatttactctcttaaacatattattttagtttttaacatttat 224  Q
    ||||||||||||||         |||||||| ||||||||| ||| ||||| ||||||||||||||    
T  38231874 aacttaagtgttggaagaaatgctatttactgtcttaaacacattcttttaatttttaacatttat 38231809  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 87 - 303
Target Start/End: Original strand, 35891761 - 35891976
Alignment:
Q  87 gttgtcagtttcatgtgcataaactaggataataagtgaaaactgcaacttactctgattgtgactagttgcaacttaagtgttggnnnnnnnnttattt 186  Q
    ||||| ||||| |||||||||||| ||||||||||||||||  | ||||||| |||  ||||||| | ||||||| |||||||| |        ||||||    
T  35891761 gttgtgagttttatgtgcataaaccaggataataagtgaaacatacaacttagtctacttgtgaccaattgcaacctaagtgttag-aaaaatgttattt 35891859  T
Q  187 actctcttaaacatattattttagtttttaacatttatctgactttgtcagggattatattgttatataagataaataattcagggatcgatttgatttt 286  Q
    | | ||||||||| ||| ||||||||||||| |||||| |||     |||| ||| | |||| |  |||||||||||||||||  ||| ||||||||  |    
T  35891860 attatcttaaacacattcttttagtttttaatatttatttgatagcatcagagatcagattgattgataagataaataattcatagatagatttgatagt 35891959  T
Q  287 gagtgacataactcaag 303  Q
    | ||||||||| |||||    
T  35891960 gggtgacataattcaag 35891976  T

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Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 185 - 314
Target Start/End: Original strand, 38226118 - 38226247
Alignment:
Q  185 ttactctcttaaacatattattttagtttttaacatttatctgactttgtcagggattatattgttatataagataaataattcagggatcgatttgatt 284  Q
    ||||||||||||| | ||||||||| |||||||||||||| |||   | ||| |||| | |||| || |||||||||||||||  | ||||| ||||||     
T  38226118 ttactctcttaaatacattattttaatttttaacatttatttgatagtatcaaggatcagattgatagataagataaataatttggtgatcgttttgata 38226217  T
Q  285 ttgagtgacataactcaaggatcgatttga 314  Q
     |||||||||||| ||| ||| | ||||||    
T  38226218 atgagtgacataattcatggaccaatttga 38226247  T

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Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 183 - 283
Target Start/End: Complemental strand, 35891690 - 35891590
Alignment:
Q  183 atttactctcttaaacatattattttagtttttaacatttatctgactttgtcagggattatattgttatataagataaataattcagggatcgatttga 282  Q
    |||||||||||||||| |||| ||||  |||||||||||||| ||||  | |||  ||||| |||| || |||| |||||||||||| ||||| ||||||    
T  35891690 atttactctcttaaacgtattcttttgatttttaacatttatttgacaatatcaaagattagattgatagataaaataaataattcatggatcaatttga 35891591  T
Q  283 t 283  Q
    |    
T  35891590 t 35891590  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 303 - 339
Target Start/End: Complemental strand, 19827956 - 19827920
Alignment:
Q  303 ggatcgatttgacagtgtgtcaatttgtaatgacttt 339  Q
    ||||||||||||||||||  |||||||||||||||||    
T  19827956 ggatcgatttgacagtgtaacaatttgtaatgacttt 19827920  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 205 - 305
Target Start/End: Complemental strand, 7000823 - 7000723
Alignment:
Q  205 ttttagtttttaacatttatctgactttgtcagggattatattgttatataagataaataattcagggatcgatttgattttgagtgacataactcaagg 304  Q
    |||||||||||| ||||||| ||||  | |||| ||| | |||| || ||| |||||||||||||| |||||||||||| || |||||||||| ||||||    
T  7000823 ttttagtttttagcatttatttgacggtatcagagatcaaattgatagatatgataaataattcagagatcgatttgatattaagtgacataattcaagg 7000724  T
Q  305 a 305  Q
    |    
T  7000723 a 7000723  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 339
Target Start/End: Original strand, 33113229 - 33113274
Alignment:
Q  294 ataactcaaggatcgatttgacagtgtgtcaatttgtaatgacttt 339  Q
    ||||||||||||| ||||| ||| ||||| ||||||||||||||||    
T  33113229 ataactcaaggattgatttcacaatgtgtaaatttgtaatgacttt 33113274  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 99 - 172
Target Start/End: Complemental strand, 2179626 - 2179553
Alignment:
Q  99 atgtgcataaactaggataataagtgaaaactgcaacttactctgattgtgactagttgcaacttaagtgttgg 172  Q
    ||||| |||||||||||||| || || |||  |||||||| ||||||||||||||||||||| ||||| |||||    
T  2179626 atgtgtataaactaggataaaaaatggaaaaagcaacttattctgattgtgactagttgcaatttaagcgttgg 2179553  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 294 - 342
Target Start/End: Original strand, 20268884 - 20268932
Alignment:
Q  294 ataactcaaggatcgatttgacagtgtgtcaatttgtaatgacttttgt 342  Q
    |||| ||||||||||||||||||||||| ||||||||||| | ||||||    
T  20268884 ataattcaaggatcgatttgacagtgtgacaatttgtaataatttttgt 20268932  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 305
Target Start/End: Original strand, 47304123 - 47304223
Alignment:
Q  205 ttttagtttttaacatttatctgactttgtcagggattatattgttatataagataaataattcagggatcgatttgattttgagtgacataactcaagg 304  Q
    ||||||||||||  || ||| ||||  | ||| |||||| |||| |||||||||||||| ||||| ||||||||||||   |||||| ||||| ||||||    
T  47304123 ttttagtttttaggatatatttgacggtatcaaggattaaattgatatataagataaatgattcaaggatcgatttgaaagtgagtggcataattcaagg 47304222  T
Q  305 a 305  Q
    |    
T  47304223 a 47304223  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 205 - 293
Target Start/End: Complemental strand, 30783601 - 30783513
Alignment:
Q  205 ttttagtttttaacatttatctgactttgtcagggattatattgttatataagataaataattcagggatcgatttgattttgagtgac 293  Q
    |||||||||||||||||||| ||||  | ||| |||| | |||| || ||  |||||||||||||||||||||||| || |||||||||    
T  30783601 ttttagtttttaacatttatttgacagtatcatggatcaaattgatagatttgataaataattcagggatcgatttaatattgagtgac 30783513  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 297
Target Start/End: Original strand, 51538003 - 51538047
Alignment:
Q  253 ataagataaataattcagggatcgatttgattttgagtgacataa 297  Q
    ||||||||||||||||| |||||||||||||  ||||||||||||    
T  51538003 ataagataaataattcatggatcgatttgataatgagtgacataa 51538047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 234 - 297
Target Start/End: Complemental strand, 51537412 - 51537349
Alignment:
Q  234 tcagggattatattgttatataagataaataattcagggatcgatttgattttgagtgacataa 297  Q
    |||| ||||||||||  | ||||||||||||||| || ||||||||||||  ||||||||||||    
T  51537412 tcagagattatattgggagataagataaataattaagtgatcgatttgatagtgagtgacataa 51537349  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 293
Target Start/End: Original strand, 20447189 - 20447229
Alignment:
Q  253 ataagataaataattcagggatcgatttgattttgagtgac 293  Q
    ||||||||||||||||||||||| |||||||  ||||||||    
T  20447189 ataagataaataattcagggatcaatttgatagtgagtgac 20447229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 193 - 296
Target Start/End: Complemental strand, 12657990 - 12657887
Alignment:
Q  193 ttaaacatattattttagtttttaacatttatctgactttgtcagggattatattgttatataagataaataattcagggatcgatttgattttgagtga 292  Q
    ||||||| ||| ||| | ||||||  |||||| ||||| | |||||||| |  ||| ||  ||||||||||||||||||||||||||||||  |||||||    
T  12657990 ttaaacacattctttcattttttaggatttatttgactgtttcagggatcaatttgatagttaagataaataattcagggatcgatttgatagtgagtga 12657891  T
Q  293 cata 296  Q
    ||||    
T  12657890 cata 12657887  T

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