View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1968_1D_high_14 (Length: 360)

Name: NF1968_1D_high_14
Description: NF1968_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1968_1D_high_14
NF1968_1D_high_14
[»] chr2 (1 HSPs)
chr2 (2-360)||(10586248-10586605)


Alignment Details
Target: chr2 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 2 - 360
Target Start/End: Original strand, 10586248 - 10586605
Alignment:
Q  2 aagtttcttatatgcatatttatagaaaaatatttgcaaactgtggcttaaacaaagaatacaagttcttgctcacttcagcatagaagtctaagtctca 101  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  10586248 aagtttcttatatgcatatttatagaaaaatatttgcaaactgtggcttaaacaaagaattcaagttcttgctcacttcagcatagaagtctaagtctca 10586347  T
Q  102 aaatttgggtgcatgaagtttccnnnnnnnnnnnnncagtttatggagaggattgttggccgtggttaataagcactgtcaaatatcaaaattaaagcac 201  Q
    |||||||||||||||||||||||             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10586348 aaatttgggtgcatgaagtttcctttttaattttt-cagtttatggagaggattgttggccgtggttaataagcactgtcaaatatcaaaattaaagcac 10586446  T
Q  202 ttctgagagactgtgaacctccaagtccgattcatattgaaatttcatcacttgagtgttatcttaatctcactacttaacaacatatgttgggccacat 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10586447 ttctgagagactgtgaacctccaagtccgattcatattgaaatttcatcacttgagtgttatcttaatctcactacttaacaacatatgttgggccacat 10586546  T
Q  302 taagttgctcatcatggtaagttaatctacaaatataagtagcaccaaacctagctgtg 360  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10586547 taagttgctcatcatggtaagttaatctacaaatataagtagcaccaaacctagctgtg 10586605  T

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