View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1968_1D_high_15 (Length: 353)
Name: NF1968_1D_high_15
Description: NF1968_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1968_1D_high_15 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 21 - 353
Target Start/End: Original strand, 28199053 - 28199385
Alignment:
| Q |
21 |
tcaagtgtggttattgtgaagatgcgtgcaaagtgtttgatgaaatgccttgcagagacgtggttgcttggactgtggttgtggctggttttgtgcaatg |
120 |
Q |
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| T |
28199053 |
tcaagtgtggttattgtgaagatgcgtgcaaagtgtttgatgaaatgccttacagagacgtggttgcttggactgtggttgtggctggttttgtgcaatg |
28199152 |
T |
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| Q |
121 |
taaaaagtaccaagatgcacttagttttttccggagaatgctgttagataatgttgtgccgaatgaatttacactgactagtgttcttagtgcttgtgct |
220 |
Q |
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| T |
28199153 |
taaaaagtaccaagatgcacttagttttttccggagaatgctgttagataatgttgtgccgaatgaatttacactgactagtgttcttagtgcttgtgct |
28199252 |
T |
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| Q |
221 |
catgtgggggcgttggatcaaggaaggttggtgcatcgatacatagagcataatgattgtaatttgaacgcagtgctagggacgtcattggtagatatgt |
320 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28199253 |
catgtgggggctttggatcaaggaaggttggtgcatcgatacatggagcataatgattgtaatttgaacgcagtgctagggacgtcattggtagatatgt |
28199352 |
T |
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| Q |
321 |
atgcaaaatgtgggtgcgttgacgaagctttga |
353 |
Q |
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|||||||||| |||||||||||| ||||||||| |
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| T |
28199353 |
atgcaaaatgcgggtgcgttgacaaagctttga |
28199385 |
T |
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