View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1968_1D_high_17 (Length: 313)
Name: NF1968_1D_high_17
Description: NF1968_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1968_1D_high_17 |
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Alignment Details
Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 20 - 298
Target Start/End: Complemental strand, 15430316 - 15430037
Alignment:
| Q |
20 |
atcaaagatgaccctcataaactccgacttaaattctccctaaaaatctttgatgaagacaaaattgattccatcaaacccaagacttttaaaattttca |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | | |||||||||||||||||||| |
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| T |
15430316 |
atcaaagatgaccctcataaactccgacttaaattctccctaaaaatctttgacgaagacaaaattgattccataaggctcaagacttttaaaattttca |
15430217 |
T |
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| Q |
120 |
caatcccacattgcgtgtttaacctcctcttcactaaccattctaaagagacctccactatcagtcatgttgagacacttt-aaatcaaatcatccaacc |
218 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |
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| T |
15430216 |
caatcccacattgtgtgtttaacctcctcttcactaaccattctaaagagacctccactatcagtcatgttgagacactttaaaatcaaatcatccaaac |
15430117 |
T |
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| Q |
219 |
aaggtctctcgattctattttctttaaaataagttgcaaagtgatcatagatcgttgctctaactttttgtatttgcatc |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
15430116 |
aaggtctctcgattctattttctttaaaataagttgcaaagtgatcatagatcgttgctctaactttttgtattagcatc |
15430037 |
T |
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