View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1968_1D_high_18 (Length: 307)
Name: NF1968_1D_high_18
Description: NF1968_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1968_1D_high_18 |
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Alignment Details
Target: chr7 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 19 - 293
Target Start/End: Complemental strand, 4223541 - 4223267
Alignment:
| Q |
19 |
atcagaggaaacctaaaaatggaaaccataaagattaaaacaactaaaaccaggtcgtgaacatagagctaggcctaggttatgaaccacagtaacccat |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4223541 |
atcagaggaaacctaaaaatggaaaccataaagattaaaacaactaaaaccaggtcgtgaacatagagctaggcctaggttatgaaccacagtaacccat |
4223442 |
T |
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| Q |
119 |
aacgttgaagaaccatatcctaaatagtgaatcgcataacaaataagggaatccataaaaccaaccacaagaacatcgattacccatttcagaaggaagg |
218 |
Q |
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||| |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4223441 |
aacattgaagaaccatatcctaaatactgaatcgcataacacataagggaatccataaaaccaaccacaagaacatcgattacccatttcagaaggaagg |
4223342 |
T |
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| Q |
219 |
cagatttggaaaagggtggagccattgttggccgtggcaacgtttggggtttaggggttgtacaatggagattgt |
293 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
4223341 |
cagatttggaaaagggtggagccattgttggccgtggcaacgtttggggtttaggggttgtacagtggagattgt |
4223267 |
T |
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