View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1968_1D_high_20 (Length: 286)

Name: NF1968_1D_high_20
Description: NF1968_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1968_1D_high_20
NF1968_1D_high_20
[»] chr3 (6 HSPs)
chr3 (14-271)||(11897148-11897405)
chr3 (13-271)||(26432588-26432846)
chr3 (13-170)||(23424497-23424654)
chr3 (13-167)||(38647179-38647333)
chr3 (13-128)||(53608336-53608451)
chr3 (79-128)||(49149802-49149851)
[»] chr8 (4 HSPs)
chr8 (14-271)||(23132475-23132732)
chr8 (20-170)||(26587230-26587380)
chr8 (108-266)||(14760016-14760174)
chr8 (13-41)||(38348466-38348494)
[»] chr1 (5 HSPs)
chr1 (14-271)||(20284849-20285106)
chr1 (12-179)||(50236550-50236717)
chr1 (12-167)||(50451893-50452048)
chr1 (70-128)||(23465403-23465461)
chr1 (16-125)||(1524969-1525078)
[»] chr2 (11 HSPs)
chr2 (14-271)||(14653570-14653827)
chr2 (18-167)||(26791322-26791471)
chr2 (13-164)||(35135219-35135370)
chr2 (13-164)||(40328174-40328325)
chr2 (70-179)||(16322502-16322611)
chr2 (91-164)||(3779048-3779121)
chr2 (91-167)||(573266-573342)
chr2 (86-172)||(42403209-42403295)
chr2 (22-167)||(177504-177649)
chr2 (91-152)||(19265490-19265551)
chr2 (116-167)||(35062956-35063007)
[»] scaffold0036 (1 HSPs)
scaffold0036 (77-167)||(75967-76057)
[»] chr4 (4 HSPs)
chr4 (13-164)||(54477407-54477558)
chr4 (18-170)||(46784469-46784621)
chr4 (13-104)||(33803974-33804065)
chr4 (86-167)||(3881787-3881868)
[»] chr5 (3 HSPs)
chr5 (61-167)||(32874457-32874563)
chr5 (13-167)||(7817131-7817285)
chr5 (70-172)||(6641008-6641110)
[»] chr6 (4 HSPs)
chr6 (13-170)||(24893833-24893990)
chr6 (70-170)||(24990660-24990760)
chr6 (60-167)||(27852952-27853059)
chr6 (70-176)||(13599639-13599745)
[»] chr7 (4 HSPs)
chr7 (70-173)||(16769956-16770059)
chr7 (70-169)||(27781628-27781727)
chr7 (94-164)||(1353794-1353864)
chr7 (22-167)||(1579159-1579304)


Alignment Details
Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 14 - 271
Target Start/End: Original strand, 11897148 - 11897405
Alignment:
Q  14 acatcaccatcaagctcatcatgcattgcgtagcttctcctagttactctatactttggaacgggaacaagttgccgcctttcaagccttctcatggcct 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11897148 acatcaccatcaagctcatcatgcattgcgtagcttctcctagttactctatactttggaacgggaacaagttgccgcctttcaagccttctcatggcct 11897247  T
Q  114 ccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttcagctgctatgaactcagcagtcggccaaggaagatgggcaccc 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||    
T  11897248 ccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttcagctactatcaactcagcagtcgtccaaggaagatgggcaccc 11897347  T
Q  214 atccaaatcacccctacggggccgcatttatcccatctcctatttgcagatgatgtcc 271  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11897348 atccaaatcacccctacggggccgcatttatcccatctcctatttgcagatgatgtcc 11897405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 13 - 271
Target Start/End: Complemental strand, 26432846 - 26432588
Alignment:
Q  13 gacatcaccatcaagctcatcatgcattgcgtagcttctcctagttactctatactttggaacgggaacaagttgccgcctttcaagccttctcatggcc 112  Q
    |||||||||||||| |||||||||||||| ||  ||||  | |  ||||||||||||||||| ||||||||||||||| ||||||| ||||||||||| |    
T  26432846 gacatcaccatcaaactcatcatgcattgtgtctcttcatcaaactactctatactttggaatgggaacaagttgccgtctttcaaaccttctcatggtc 26432747  T
Q  113 tccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttcagctgctatgaactcagcagtcggccaaggaagatgggcacc 212  Q
    |||||||||||||||| |||||||||||||| |||||| |||||||||||||||| || |||||||| ||||| || |||  |||||||||||||| |||    
T  26432746 tccgacaaggtgatccattgtccccttatctcttcatcatttgcatggaaaagctatccgctgctatcaactccgccgtcacccaaggaagatgggaacc 26432647  T
Q  213 catccaaatcacccctacggggccgcatttatcccatctcctatttgcagatgatgtcc 271  Q
     || |||||||| ||||||||||||||||||||||| ||||| |||||| |||||||||    
T  26432646 gattcaaatcactcctacggggccgcatttatcccacctcctttttgcaaatgatgtcc 26432588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 13 - 170
Target Start/End: Original strand, 23424497 - 23424654
Alignment:
Q  13 gacatcaccatcaagctcatcatgcattgcgt-agcttctcctagttactctatactttggaacgggaacaagttgccgcctttcaagccttctcatggc 111  Q
    ||||||||||||||||||||||| ||||| || | || ||||   || ||| ||| | ||||| || |||||  |||| |||||||||||  | |||||     
T  23424497 gacatcaccatcaagctcatcatacattgtgtcacctcctccacatt-ctcaatattatggaaaggtaacaaaatgccccctttcaagcccacacatggt 23424595  T
Q  112 ctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttc 170  Q
    ||| |||||||||| ||| | || |||||||||||||| || |||||||||||||||||    
T  23424596 ctcagacaaggtgacccgctctctccttatcttttcatactatgcatggaaaagctttc 23424654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 167
Target Start/End: Complemental strand, 38647333 - 38647179
Alignment:
Q  13 gacatcaccatcaagctcatcatgcattgcgtagcttctcctagttactctatactttggaacgggaacaagttgccgcctttcaagccttctcatggcc 112  Q
    ||||||||||||||||||||||||||||| ||  | ||  | |  | |||||| ||||||||||| || ||  |||| ||||| |||||||| || || |    
T  38647333 gacatcaccatcaagctcatcatgcattgtgtttcatcatccaccttctctattctttggaacggtaataaaatgcccccttttaagccttcccacggtc 38647234  T
Q  113 tccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagct 167  Q
    || |||||||||||||| | || || || || |||||  | ||||||||||||||    
T  38647233 tcagacaaggtgatccgctctctccctacctcttcattttatgcatggaaaagct 38647179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 128
Target Start/End: Complemental strand, 53608451 - 53608336
Alignment:
Q  13 gacatcaccatcaagctcatcatgcattgcgtagcttctcctagttactctatactttggaacgggaacaagttgccgcctttcaagccttctcatggcc 112  Q
    ||||||||||||||||||||||||||||| ||  | ||  |||  | |||||| |||||||| || |||||  ||||  |||||| |||||| ||||| |    
T  53608451 gacatcaccatcaagctcatcatgcattgtgtttcctcctctaccttctctattctttggaatggaaacaaaatgccttctttcaggccttcacatggtc 53608352  T
Q  113 tccgacaaggtgatcc 128  Q
    || |||| ||||||||    
T  53608351 tcagacagggtgatcc 53608336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 128
Target Start/End: Complemental strand, 49149851 - 49149802
Alignment:
Q  79 aacaagttgccgcctttcaagccttctcatggcctccgacaaggtgatcc 128  Q
    ||||| ||||||| |||||||||| ||||||| || ||||||||||||||    
T  49149851 aacaaattgccgcatttcaagcctactcatggtcttcgacaaggtgatcc 49149802  T

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Target: chr8 (Bit Score: 238; Significance: 1e-132; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 14 - 271
Target Start/End: Complemental strand, 23132732 - 23132475
Alignment:
Q  14 acatcaccatcaagctcatcatgcattgcgtagcttctcctagttactctatactttggaacgggaacaagttgccgcctttcaagccttctcatggcct 113  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23132732 acatcaccatcaagttcatcatgcattgcgtagcttctcctagttactctatactttggaacgggaacaagttgccgcctttcaagccttctcatggcct 23132633  T
Q  114 ccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttcagctgctatgaactcagcagtcggccaaggaagatgggcaccc 213  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||    
T  23132632 ccgacaaggtgatacgttgtccccttatcttttcatcctttgcatggaaaagctttcagctgctatcaactcagcagtcgcccaaggaagatgggcaccc 23132533  T
Q  214 atccaaatcacccctacggggccgcatttatcccatctcctatttgcagatgatgtcc 271  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  23132532 atccaaatcacccctacggggccccatttatcccatctcctatttgcagatgatgtcc 23132475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 20 - 170
Target Start/End: Original strand, 26587230 - 26587380
Alignment:
Q  20 ccatcaagctcatcatgcattgcgtagcttctcctagttactctatactttggaacgggaacaagttgccgcctttcaagccttctcatggcctccgaca 119  Q
    ||||||| |||||||||||||||||  ||||  |||  | | | || ||||| || || ||||| ||||| || ||||||||| ||||||||||||||||    
T  26587230 ccatcaaactcatcatgcattgcgtcacttcatctaccttcaccatcctttgaaatggtaacaaattgccccccttcaagcctactcatggcctccgaca 26587329  T
Q  120 aggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttc 170  Q
    |||||| || ||||| || || || ||||| ||||| ||||| || |||||    
T  26587330 aggtgacccattgtctccctacctcttcattctttgtatggagaaactttc 26587380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 266
Target Start/End: Original strand, 14760016 - 14760174
Alignment:
Q  108 tggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttcagctgctatgaactcagcagtcggccaaggaagatgg 207  Q
    |||||| || ||||| |||||||||||||| || || ||||| ||||| ||||||||||| ||   |||||| || ||||| |||   |||||||| |||    
T  14760016 tggccttcgccaaggagatccgttgtccccatacctcttcattctttgtatggaaaagctctctattgctataaattcagcggtcaatcaaggaagttgg 14760115  T
Q  208 gcacccatccaaatcacccctacggggccgcatttatcccatctcctatttgcagatga 266  Q
    | |||  | ||||||||   ||||||||| ||  |||| || || ||||||||||||||    
T  14760116 gaaccggttcaaatcacaaatacggggccccagatatctcacctactatttgcagatga 14760174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 41
Target Start/End: Original strand, 38348466 - 38348494
Alignment:
Q  13 gacatcaccatcaagctcatcatgcattg 41  Q
    |||||||||||||||||||||||||||||    
T  38348466 gacatcaccatcaagctcatcatgcattg 38348494  T

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Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 14 - 271
Target Start/End: Original strand, 20284849 - 20285106
Alignment:
Q  14 acatcaccatcaagctcatcatgcattgcgtagcttctcctagttactctatactttggaacgggaacaagttgccgcctttcaagccttctcatggcct 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||| ||||||||||||||||    
T  20284849 acatcaccatcaagctcatcatgcattgcgtagcttctcctagttactctatactttggaacgggaaagggttgccgcctttcgagccttctcatggcct 20284948  T
Q  114 ccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttcagctgctatgaactcagcagtcggccaaggaagatgggcaccc 213  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||    
T  20284949 gcgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttcagctgctatcaactcagcagtcgcccaaggaagatgggcaccc 20285048  T
Q  214 atccaaatcacccctacggggccgcatttatcccatctcctatttgcagatgatgtcc 271  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20285049 atccaaatcacccctacggggccgcatttatcccatctcctatttgcagatgatgtcc 20285106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 12 - 179
Target Start/End: Complemental strand, 50236717 - 50236550
Alignment:
Q  12 ggacatcaccatcaagctcatcatgcattgcgtagcttctcctagttactctatactttggaacgggaacaagttgccgcctttcaagccttctcatggc 111  Q
    ||||||||||| ||| |||||||||||||| ||  | || || |  ||||||||  | ||||||||||||||| |||| |||||||||||| ||||||||    
T  50236717 ggacatcaccaccaaactcatcatgcattgtgtctcctcacccacctactctatcttatggaacgggaacaagatgccccctttcaagcctactcatggc 50236618  T
Q  112 ctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttcagctgctat 179  Q
    ||| || ||||||||||| | |||||||| ||||||||| | || ||||| || || |||| ||||||    
T  50236617 ctcagataaggtgatccgctttccccttaccttttcatcttgtgtatggagaaactatcagttgctat 50236550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 12 - 167
Target Start/End: Original strand, 50451893 - 50452048
Alignment:
Q  12 ggacatcaccatcaagctcatcatgcattgcgt-agcttctcctagttactctatactttggaacgggaacaagttgccgcctttcaagccttctcatgg 110  Q
    ||||||||||||||| || ||||||||||| || | || |||| | || ||||||  | ||||| || |||||  |||||| |||||| ||| | |||||    
T  50451893 ggacatcaccatcaaacttatcatgcattgtgtcacctcctcc-actttctctatcttatggaatggtaacaaaatgccgcatttcaaacctacacatgg 50451991  T
Q  111 cctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagct 167  Q
    ||||||||||||||||||| | || ||||| || ||||| ||||| ||||| |||||    
T  50451992 cctccgacaaggtgatccgctttctccttacctcttcattctttgtatggagaagct 50452048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 128
Target Start/End: Original strand, 23465403 - 23465461
Alignment:
Q  70 tggaacgggaacaagttgccgcctttcaagccttctcatggcctccgacaaggtgatcc 128  Q
    ||||| || ||||| ||||||| |||||||||| ||||||| || ||||||||||||||    
T  23465403 tggaatggtaacaaattgccgcatttcaagcctactcatggtcttcgacaaggtgatcc 23465461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 125
Target Start/End: Original strand, 1524969 - 1525078
Alignment:
Q  16 atcaccatcaagctcatcatgcattgcgtagcttctcctagttactctatactttggaacgggaacaagttgccgcctttcaagccttctcatggcctcc 115  Q
    ||||||||||| |||||||||||||| ||  | ||||||   | |||||| |||||||| || ||||| || || |||||||||||||| || || || |    
T  1524969 atcaccatcaaactcatcatgcattgtgttacctctcctgccttctctattctttggaatggtaacaaattacctcctttcaagccttcccacggtcttc 1525068  T
Q  116 gacaaggtga 125  Q
    | ||||||||    
T  1525069 ggcaaggtga 1525078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 14 - 271
Target Start/End: Complemental strand, 14653827 - 14653570
Alignment:
Q  14 acatcaccatcaagctcatcatgcattgcgtagcttctcctagttactctatactttggaacgggaacaagttgccgcctttcaagccttctcatggcct 113  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  14653827 acatcaccatcaagctcatcatgcattgcgtagcttctccgagttactctatactttggaatgggaacaagttgccgcctttcaagccttctcatggcct 14653728  T
Q  114 ccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttcagctgctatgaactcagcagtcggccaaggaagatgggcaccc 213  Q
    || ||||||||||||||||||||||||| ||||||||||||||||||||||||| || |||||||| ||||||||||| | |||||||||||||||||||    
T  14653727 ccaacaaggtgatccgttgtccccttattttttcatcctttgcatggaaaagctatccgctgctataaactcagcagttgcccaaggaagatgggcaccc 14653628  T
Q  214 atccaaatcacccctacggggccgcatttatcccatctcctatttgcagatgatgtcc 271  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  14653627 atccaaatcactcctacggggccgcatttatcccatctcctatttgcagatgatgtcc 14653570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 167
Target Start/End: Original strand, 26791322 - 26791471
Alignment:
Q  18 caccatcaagctcatcatgcattgcgtagcttctcctagttactctatactttggaacgggaacaagttgccgcctttcaagccttctcatggcctccga 117  Q
    |||||||||||||||||||||||||||  ||||  | || | |||||| |||||||| || || | |||||| |||||| ||||| ||||||||||| |     
T  26791322 caccatcaagctcatcatgcattgcgttacttcatccagcttctctattctttggaatggaaataggttgcctcctttcgagcctactcatggcctcagg 26791421  T
Q  118 caaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagct 167  Q
    || ||||||||| | ||||| || ||||| || ||||||||||| |||||    
T  26791422 cagggtgatccgctttccccgtacctttttattctttgcatggagaagct 26791471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 13 - 164
Target Start/End: Complemental strand, 35135370 - 35135219
Alignment:
Q  13 gacatcaccatcaagctcatcatgcattgcgtagcttctcctagttactctatactttggaacgggaacaagttgccgcctttcaagccttctcatggcc 112  Q
    ||||| |||||||| |||||||||||||| ||  | || || || ||||| ||  | ||||| || |||||| |  | |||||||||||| ||||||| |    
T  35135370 gacattaccatcaaactcatcatgcattgtgttacctcaccaagctactcaattttatggaatggaaacaagctctctcctttcaagcctactcatggac 35135271  T
Q  113 tccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaa 164  Q
    | || |||||||| |||||||| ||||||||||||||||| || ||||||||    
T  35135270 ttcgtcaaggtgacccgttgtctccttatcttttcatcctatgtatggaaaa 35135219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 13 - 164
Target Start/End: Original strand, 40328174 - 40328325
Alignment:
Q  13 gacatcaccatcaagctcatcatgcattgcgtagcttctcctagttactctatactttggaacgggaacaagttgccgcctttcaagccttctcatggcc 112  Q
    ||||| |||||||| |||||||||||||| ||  | || || || ||||| ||  | ||||| || |||||| |  | |||||||||||| ||||||| |    
T  40328174 gacattaccatcaaactcatcatgcattgtgttacctcaccgagctactcaattttatggaatggaaacaagctttctcctttcaagcctactcatggac 40328273  T
Q  113 tccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaa 164  Q
    | || |||||||| |||||||| ||||||||||||||||| || ||||||||    
T  40328274 ttcgtcaaggtgacccgttgtctccttatcttttcatcctatgtatggaaaa 40328325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 70 - 179
Target Start/End: Original strand, 16322502 - 16322611
Alignment:
Q  70 tggaacgggaacaagttgccgcctttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagcttt 169  Q
    ||||| || |||||| |||| |||||||||||  |||||||||| ||||||||||| ||| | || || || |||||||| |||||||||||||| ||||    
T  16322502 tggaatggaaacaagatgcctcctttcaagcccactcatggccttcgacaaggtgacccgctttctccgtaccttttcatactttgcatggaaaaacttt 16322601  T
Q  170 cagctgctat 179  Q
    | | ||||||    
T  16322602 ctgttgctat 16322611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 91 - 164
Target Start/End: Complemental strand, 3779121 - 3779048
Alignment:
Q  91 cctttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaa 164  Q
    |||||||||||| ||||||| || || |||||||| ||| |||| ||||||||||||||||| || ||||||||    
T  3779121 cctttcaagcctactcatggacttcgtcaaggtgacccgctgtctccttatcttttcatcctctgtatggaaaa 3779048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 91 - 167
Target Start/End: Original strand, 573266 - 573342
Alignment:
Q  91 cctttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagct 167  Q
    ||||| || ||||| ||||||||| |||||||||||||| | || ||||| || ||||||||||||||||| |||||    
T  573266 ccttttaaaccttcccatggcctcagacaaggtgatccgctctctccttacctattcatcctttgcatggagaagct 573342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 86 - 172
Target Start/End: Complemental strand, 42403295 - 42403209
Alignment:
Q  86 tgccgcctttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttcag 172  Q
    |||| |||||||||||  ||||||||||||| |||||||| ||  | || |||||||| || || || |||||||||||||||||||    
T  42403295 tgcctcctttcaagcccactcatggcctccggcaaggtgaccctctctcaccttatctatttatactgtgcatggaaaagctttcag 42403209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 167
Target Start/End: Original strand, 177504 - 177649
Alignment:
Q  22 atcaagctcatcatgcattgcgtagcttctcctagttactctatactttggaacgggaacaagttgccgcctttcaagccttctcatggcctccgacaag 121  Q
    ||||| |||||||||||||| ||  ||||| | |  | |||| | |||||||| || ||||| | ||| ||| |||||||| ||||||| ||  ||||||    
T  177504 atcaaactcatcatgcattgtgtcacttcttcaacattctctgttctttggaatggaaacaaatggcctcctatcaagcctactcatggtctaagacaag 177603  T
Q  122 gtgatccgttgtccccttatcttttcatcctttgcatggaaaagct 167  Q
    |||| || ||||| ||||| || |||||| | ||||||||||||||    
T  177604 gtgaccctttgtctccttacctattcatcatctgcatggaaaagct 177649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 91 - 152
Target Start/End: Original strand, 19265490 - 19265551
Alignment:
Q  91 cctttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcct 152  Q
    |||||||||||| ||||||| || || |||||||| ||| |||| |||||||||||||||||    
T  19265490 cctttcaagcctactcatggacttcgtcaaggtgacccgctgtctccttatcttttcatcct 19265551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 116 - 167
Target Start/End: Complemental strand, 35063007 - 35062956
Alignment:
Q  116 gacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagct 167  Q
    |||||||||||||  | ||||| ||||||||||||||||| |||||||||||    
T  35063007 gacaaggtgatccactatccccctatcttttcatcctttgtatggaaaagct 35062956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 77 - 167
Target Start/End: Original strand, 75967 - 76057
Alignment:
Q  77 ggaacaagttgccgcctttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagct 167  Q
    |||||||| ||||  | ||||||||| ||||||| ||| |||||||||| | |||||||||||||||||||||||||||||||||||||||    
T  75967 ggaacaagctgccttccttcaagcctactcatggtctcagacaaggtgaccagttgtccccttatcttttcatcctttgcatggaaaagct 76057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 7e-21; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 13 - 164
Target Start/End: Complemental strand, 54477558 - 54477407
Alignment:
Q  13 gacatcaccatcaagctcatcatgcattgcgtagcttctcctagttactctatactttggaacgggaacaagttgccgcctttcaagccttctcatggcc 112  Q
    ||||||||||||||||||||||||||||| ||  | ||  | |  |||| ||| |||||||| || |||||| | ||  ||||||||||| | ||||| |    
T  54477558 gacatcaccatcaagctcatcatgcattgtgtttcatcatcaaaatactttatcctttggaatggaaacaagcttccatctttcaagcctacacatggtc 54477459  T
Q  113 tccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaa 164  Q
    | || ||||||||||| |||||||||||||| ||||| ||||||||||||||    
T  54477458 tgcgccaaggtgatcctttgtccccttatctcttcattctttgcatggaaaa 54477407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 18 - 170
Target Start/End: Complemental strand, 46784621 - 46784469
Alignment:
Q  18 caccatcaagctcatcatgcattgcgtagcttctcctagttactctatactttggaacgggaacaagttgccgcctttcaagccttctcatggcctccga 117  Q
    |||||||||||||||||||||||| ||  | ||  | | || |||  | |||||||| || || || |||||||||||||| ||| ||||||||||  ||    
T  46784621 caccatcaagctcatcatgcattgtgttacgtcatcaactttctccgtcctttggaatggaaataaattgccgcctttcaaacctactcatggccttaga 46784522  T
Q  118 caaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttc 170  Q
    |||||||||||  | || || || || ||||||||||||||| |||| |||||    
T  46784521 caaggtgatcctctatctccctacctcttcatcctttgcatgaaaaaactttc 46784469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 104
Target Start/End: Original strand, 33803974 - 33804065
Alignment:
Q  13 gacatcaccatcaagctcatcatgcattgcgtagcttctcctagttactctatactttggaacgggaacaagttgccgcctttcaagccttc 104  Q
    ||||||||||||||||||||||||||||| ||  | ||  |||  ||||||||||| ||||| || |||||  |||| ||||||||||||||    
T  33803974 gacatcaccatcaagctcatcatgcattgtgtttcctcatctacatactctatactgtggaatggaaacaaaatgcctcctttcaagccttc 33804065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 86 - 167
Target Start/End: Original strand, 3881787 - 3881868
Alignment:
Q  86 tgccgcctttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagct 167  Q
    |||||| |||||| ||| | |||||||||||||||||||||||| | || | ||| || ||||| ||||| |||||||||||    
T  3881787 tgccgcatttcaaacctacacatggcctccgacaaggtgatccgctttctctttacctcttcattctttgtatggaaaagct 3881868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 61 - 167
Target Start/End: Complemental strand, 32874563 - 32874457
Alignment:
Q  61 tctatactttggaacgggaacaagttgccgcctttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatgg 160  Q
    ||||| ||||| || |||||||||||||| |||||||||||||||||||||||||| ||||| || ||| | || || ||| | |||||| |||||||||    
T  32874563 tctatcctttgaaatgggaacaagttgcctcctttcaagccttctcatggcctccgccaaggagacccgctctctccctatttattcatcatttgcatgg 32874464  T
Q  161 aaaagct 167  Q
    |||||||    
T  32874463 aaaagct 32874457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 167
Target Start/End: Original strand, 7817131 - 7817285
Alignment:
Q  13 gacatcaccatcaagctcatcatgcattgcgtagcttctcctagttactctatactttggaacgggaacaagttgccgcctttcaagccttctcatggcc 112  Q
    |||||||| |||||||||||||||||||| ||| | ||  | |  ||||||||  | ||||| ||||||||  | ||  ||||||||||| ||||||| |    
T  7817131 gacatcacaatcaagctcatcatgcattgtgtatcatcctccaactactctattttatggaatgggaacaaacttccttctttcaagcctactcatggtc 7817230  T
Q  113 tccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagct 167  Q
    || |||| ||||| || || || ||||| |||||||| |||||||||||||||||    
T  7817231 tcagacagggtgaccctttatctccttaccttttcattctttgcatggaaaagct 7817285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 172
Target Start/End: Complemental strand, 6641110 - 6641008
Alignment:
Q  70 tggaacgggaacaagttgccgcctttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagcttt 169  Q
    |||||||| |||||  || | |||||||||||  |||||||||||||| ||||||||||| | || || || || |||||  | ||||||||||| ||||    
T  6641110 tggaacggaaacaaaatgtcccctttcaagcccactcatggcctccgaaaaggtgatccgctctctccctacctcttcattatgtgcatggaaaaacttt 6641011  T
Q  170 cag 172  Q
    |||    
T  6641010 cag 6641008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 170
Target Start/End: Complemental strand, 24893990 - 24893833
Alignment:
Q  13 gacatcaccatcaagctcatcatgcattgcgt-agcttctcctagttactctatactttggaacgggaacaagttgccgcctttcaagccttctcatggc 111  Q
    ||||||||||||||||||||||||||||| || | || ||||   || ||| ||| | ||||| || |||||  |||| |||||||||||  | |||||     
T  24893990 gacatcaccatcaagctcatcatgcattgtgtcacctcctccacatt-ctccatattatggaatggtaacaaaatgccccctttcaagcccacacatggt 24893892  T
Q  112 ctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttc 170  Q
    ||| |||||||||| ||| | || |||||||||||||| || |||||||||||||||||    
T  24893891 ctcagacaaggtgacccgctctctccttatcttttcatactatgcatggaaaagctttc 24893833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 70 - 170
Target Start/End: Complemental strand, 24990760 - 24990660
Alignment:
Q  70 tggaacgggaacaagttgccgcctttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagcttt 169  Q
    |||||||| |||||  |||| |||||||||||  | ||||| ||| |||||||||| ||| | || |||||||||||||| ||||||||||| |||||||    
T  24990760 tggaacggtaacaaaatgccccctttcaagcccacccatggtctcagacaaggtgacccgctctctccttatcttttcattctttgcatggagaagcttt 24990661  T
Q  170 c 170  Q
    |    
T  24990660 c 24990660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 60 - 167
Target Start/End: Complemental strand, 27853059 - 27852952
Alignment:
Q  60 ctctatactttggaacgggaacaagttgccgcctttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatg 159  Q
    |||||| ||||||||||| |||||  ||||  ||||||||||||||||||| ||  ||||||| || || || || |||||  | ||||||||||| |||    
T  27853059 ctctattctttggaacggaaacaaaatgccttctttcaagccttctcatggtctaagacaaggggaccctttatctccttacttattcatcctttgtatg 27852960  T
Q  160 gaaaagct 167  Q
    ||||||||    
T  27852959 gaaaagct 27852952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 176
Target Start/End: Original strand, 13599639 - 13599745
Alignment:
Q  70 tggaacgggaacaagttgccgcctttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagcttt 169  Q
    ||||| || |||||||| ||||  ||||||||| ||||||  ||||| |||||||||||  | || |||||||| |||||| | || |||||||| ||||    
T  13599639 tggaatggtaacaagtttccgcaattcaagcctactcatgatctccgtcaaggtgatcctctttcaccttatctcttcatcttgtgtatggaaaaacttt 13599738  T
Q  170 cagctgc 176  Q
    |||||||    
T  13599739 cagctgc 13599745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 70 - 173
Target Start/End: Complemental strand, 16770059 - 16769956
Alignment:
Q  70 tggaacgggaacaagttgccgcctttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagcttt 169  Q
    ||||| || ||||| ||||||| |||||| ||| ||||||| || ||||||||||||||  | || |||||||| |||||| | || |||||||| || |    
T  16770059 tggaatggtaacaaattgccgcatttcaaacctactcatggtcttcgacaaggtgatcctctttcaccttatctcttcatcttgtgtatggaaaaactct 16769960  T
Q  170 cagc 173  Q
    ||||    
T  16769959 cagc 16769956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 70 - 169
Target Start/End: Complemental strand, 27781727 - 27781628
Alignment:
Q  70 tggaacgggaacaagttgccgcctttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagcttt 169  Q
    ||||||||||||||  |||| || || |||||  ||||||||||| |||||||||| ||  | || ||||| || |||||||| |||||||| |||||||    
T  27781727 tggaacgggaacaaaatgcctccatttaagccaactcatggcctcagacaaggtgaccctctttcaccttacctcttcatcctctgcatggagaagcttt 27781628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 164
Target Start/End: Complemental strand, 1353864 - 1353794
Alignment:
Q  94 ttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaa 164  Q
    ||||||||| |||||||||||  ||||||||||||  | || || ||||||||||| ||||| ||||||||    
T  1353864 ttcaagcctactcatggcctcatacaaggtgatccactctcaccatatcttttcattctttgtatggaaaa 1353794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 167
Target Start/End: Complemental strand, 1579304 - 1579159
Alignment:
Q  22 atcaagctcatcatgcattgcgtagcttctcctagttactctatactttggaacgggaacaagttgccgcctttcaagccttctcatggcctccgacaag 121  Q
    ||||| |||||||||||||| ||  ||||| | | || |||||| || | |||  | ||||||||||| || ||  | ||| ||||||| ||| |||| |    
T  1579304 atcaatctcatcatgcattgtgtttcttcttcaactttctctattctctagaatagaaacaagttgcctccctttcatcctactcatgggctcagacagg 1579205  T
Q  122 gtgatccgttgtccccttatcttttcatcctttgcatggaaaagct 167  Q
    |||||||| | |||||||| || || || |||||||||||||||||    
T  1579204 gtgatccgctctccccttacctctttattctttgcatggaaaagct 1579159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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