View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1968_1D_high_24 (Length: 259)
Name: NF1968_1D_high_24
Description: NF1968_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1968_1D_high_24 |
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Alignment Details
Target: chr5 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 6 - 253
Target Start/End: Complemental strand, 12762878 - 12762632
Alignment:
| Q |
6 |
tggtgttcacaagaatttgagaaccattttaaaaaattacacacgtctgtctgaaactgctcatgaattgaaacgcatcaaggaaagcaacaaaattcac |
105 |
Q |
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|||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
12762878 |
tggtcttcacaagaatttgagaaacattttaaaaaattacacacgtctgtctgaaactgctcatgaattgaaacgcatcaaggaaagcaacaaa-ttcac |
12762780 |
T |
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| Q |
106 |
ctatcattgttgacattcatacacatttccaagttgtttttgtcatcgcaaagaatccattgatgtcacccgaacaacaagttggacttgttataaatgt |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12762779 |
ctatcattgttgacattcatacacatttccaagttgtttttgtcatcgcaaagaatccattgatgtcacccgaacaacaagttggacttgttataaatgc |
12762680 |
T |
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| Q |
206 |
gttatcgaaaaaactgcatcgacattgcatttcacctggccataattc |
253 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12762679 |
gttatcgaaaaaactgcatcgacattgcatttcacctggccataattc |
12762632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 6 - 253
Target Start/End: Complemental strand, 12701878 - 12701632
Alignment:
| Q |
6 |
tggtgttcacaagaatttgagaaccattttaaaaaattacacacgtctgtctgaaactgctcatgaattgaaacgcatcaaggaaagcaacaaaattcac |
105 |
Q |
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|||| ||||||||||||||| || ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
12701878 |
tggtcttcacaagaatttgataaacattttaaaaaattacacatgtctgtctgaaactgctcatgaattgaaacgcatcaaggaaagcaacaaa-ttcac |
12701780 |
T |
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| Q |
106 |
ctatcattgttgacattcatacacatttccaagttgtttttgtcatcgcaaagaatccattgatgtcacccgaacaacaagttggacttgttataaatgt |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12701779 |
ctatcattgttgacattcatacacatttccaagttgtttttgtcatcgcaaagaatccattgatgtcacccgaacaacaagttggacttgttataaatgc |
12701680 |
T |
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| Q |
206 |
gttatcgaaaaaactgcatcgacattgcatttcacctggccataattc |
253 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12701679 |
gttatcgaaaaaactgcatcgacattgcatttcacctggccataattc |
12701632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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