View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1968_1D_high_30 (Length: 216)

Name: NF1968_1D_high_30
Description: NF1968_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1968_1D_high_30
NF1968_1D_high_30
[»] chr7 (8 HSPs)
chr7 (7-205)||(4095083-4095281)
chr7 (37-205)||(4189057-4189225)
chr7 (46-205)||(4192206-4192365)
chr7 (34-205)||(4233692-4233863)
chr7 (37-205)||(4195949-4196117)
chr7 (7-114)||(4102615-4102722)
chr7 (37-192)||(4241483-4241638)
chr7 (37-204)||(4250726-4250893)
[»] chr6 (1 HSPs)
chr6 (141-199)||(5525147-5525205)


Alignment Details
Target: chr7 (Bit Score: 163; Significance: 3e-87; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 7 - 205
Target Start/End: Original strand, 4095083 - 4095281
Alignment:
Q  7 gtttccttcgataaaattgtggagcacaattcaccacaggaagcttctttatctcgttcttttgtacctcacttagaatcaacagagtcttttgcttcta 106  Q
    |||||||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |||| |||||||||||||    
T  4095083 gtttccttcgataaaattttggagcacaattcaccacaagaagcttctttgtctcgttcttttgtacctcacttagaatcatcagattcttttgcttcta 4095182  T
Q  107 tcatttcaattcagataactctttttccgaaaagtggtttttccattggaataagcgcacaccatgctgttcttgatggaaaatcttcaaccatgttca 205  Q
    | ||||||||||||||||| ||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  4095183 ttatttcaattcagataaccctttttccgaaaaatggtttttccattggaataagcacacaccatgctgttcttgatggaaaatcttcaaccatgttca 4095281  T

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Target: chr7; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 37 - 205
Target Start/End: Original strand, 4189057 - 4189225
Alignment:
Q  37 tcaccacaggaagcttctttatctcgttcttttgtacctcacttagaatcaacagagtcttttgcttctatcatttcaattcagataactctttttccga 136  Q
    ||||| || ||||||||||| |||||||||||| |||| || || ||||||||||| || | ||||||||| ||||||||||||||||| |||||||| |    
T  4189057 tcacctcatgaagcttctttgtctcgttcttttctaccacatttggaatcaacagattcatctgcttctattatttcaattcagataaccctttttccaa 4189156  T
Q  137 aaagtggtttttccattggaataagcgcacaccatgctgttcttgatggaaaatcttcaaccatgttca 205  Q
    |||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |||||||||||||    
T  4189157 aaagtggtttttccattggaataagcacacaccatgctggtcttgatggaaaatcatcaaccatgttca 4189225  T

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Target: chr7; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 46 - 205
Target Start/End: Original strand, 4192206 - 4192365
Alignment:
Q  46 gaagcttctttatctcgttcttttgtacctcacttagaatcaacagagtcttttgcttctatcatttcaattcagataactctttttccgaaaagtggtt 145  Q
    ||||||||||| |||||||||||| |||| || || |||||  |||| |||||||||||||| |||||| |||||||||| |||||||  ||||||||||    
T  4192206 gaagcttctttgtctcgttcttttataccgcatttggaatccgcagattcttttgcttctattatttcagttcagataaccctttttcaaaaaagtggtt 4192305  T
Q  146 tttccattggaataagcgcacaccatgctgttcttgatggaaaatcttcaaccatgttca 205  Q
    |||||||| |||  ||| ||||||||| ||||||||||||||||||||||||||||||||    
T  4192306 tttccattagaactagcacacaccatggtgttcttgatggaaaatcttcaaccatgttca 4192365  T

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Target: chr7; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 34 - 205
Target Start/End: Original strand, 4233692 - 4233863
Alignment:
Q  34 aattcaccacaggaagcttctttatctcgttcttttgtacctcacttagaatcaacagagtcttttgcttctatcatttcaattcagataactctttttc 133  Q
    |||||||| || || |||||||| ||||||| ||||||||| || |||||||| ||| | |||||||||||||| || ||| |||||||||| |||||||    
T  4233692 aattcaccccacgatgcttctttgtctcgttgttttgtaccacatttagaatcgacaaattcttttgcttctattatctcagttcagataaccctttttc 4233791  T
Q  134 cgaaaagtggtttttccattggaataagcgcacaccatgctgttcttgatggaaaatcttcaaccatgttca 205  Q
    |  |||||||||||||||||||||||||| | || ||||||| ||||||||||||||| |||||||||||||    
T  4233792 cagaaagtggtttttccattggaataagcactcatcatgctgctcttgatggaaaatcctcaaccatgttca 4233863  T

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Target: chr7; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 37 - 205
Target Start/End: Original strand, 4195949 - 4196117
Alignment:
Q  37 tcaccacaggaagcttctttatctcgttcttttgtacctcacttagaatcaacagagtcttttgcttctatcatttcaattcagataactctttttccga 136  Q
    ||||| || ||||||||||| ||||| |||||| |||| || || |||||||| || |||||||||||||| || ||||||||||||||  ||||||||     
T  4195949 tcaccccatgaagcttctttgtctcgctcttttataccacatttggaatcaactgattcttttgcttctattatctcaattcagataaccttttttccgg 4196048  T
Q  137 aaagtggtttttccattggaataagcgcacaccatgctgttcttgatggaaaatcttcaaccatgttca 205  Q
    |||||||||||||||||||||||||| | ||||||||| |||| ||||||||||| |||| ||||||||    
T  4196049 aaagtggtttttccattggaataagcactcaccatgctattctagatggaaaatcctcaatcatgttca 4196117  T

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Target: chr7; HSP #6
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 7 - 114
Target Start/End: Original strand, 4102615 - 4102722
Alignment:
Q  7 gtttccttcgataaaattgtggagcacaattcaccacaggaagcttctttatctcgttcttttgtacctcacttagaatcaacagagtcttttgcttcta 106  Q
    ||||||||||||||| || |||||||||| |||||||| ||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||| |    
T  4102615 gtttccttcgataaagttttggagcacaaatcaccacaagaagcttctttgtctcgttcgtttgtacctcacttagaatcaacagattcttttgcttcca 4102714  T
Q  107 tcatttca 114  Q
    | ||||||    
T  4102715 ttatttca 4102722  T

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Target: chr7; HSP #7
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 37 - 192
Target Start/End: Original strand, 4241483 - 4241638
Alignment:
Q  37 tcaccacaggaagcttctttatctcgttcttttgtacctcacttagaatcaacagagtcttttgcttctatcatttcaattcagataactctttttccga 136  Q
    |||||| | ||||||| ||| |||||||||||| |||| || ||  |||||||| | |||||||||||||| || ||| | || |||||||||||||| |    
T  4241483 tcaccaaaagaagcttatttgtctcgttcttttataccacatttgaaatcaacaaattcttttgcttctattatctcactccaaataactctttttccaa 4241582  T
Q  137 aaagtggtttttccattggaataagcgcacaccatgctgttcttgatggaaaatct 192  Q
    || ||||||||||||||||||||||| | || ||||||||||||||||||||||||    
T  4241583 aacgtggtttttccattggaataagcactcatcatgctgttcttgatggaaaatct 4241638  T

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Target: chr7; HSP #8
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 37 - 204
Target Start/End: Original strand, 4250726 - 4250893
Alignment:
Q  37 tcaccacaggaagcttctttatctcgttcttttgtacctcacttagaatcaacagagtcttttgcttctatcatttcaattcagataactctttttccga 136  Q
    ||||| || ||||||||||| |||||||||||| |||| |||||||||||| |||| |||||||||||||| || ||| | || || || ||||| || |    
T  4250726 tcaccccatgaagcttctttgtctcgttcttttataccccacttagaatcatcagattcttttgcttctattatgtcactccaaatcacccttttcccaa 4250825  T
Q  137 aaagtggtttttccattggaataagcgcacaccatgctgttcttgatggaaaatcttcaaccatgttc 204  Q
    | |||||||||  ||| ||||| ||| | || ||||||||||||||||||||||||||||||||||||    
T  4250826 atagtggttttagcatcggaatcagcactcatcatgctgttcttgatggaaaatcttcaaccatgttc 4250893  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 199
Target Start/End: Original strand, 5525147 - 5525205
Alignment:
Q  141 tggtttttccattggaataagcgcacaccatgctgttcttgatggaaaatcttcaacca 199  Q
    |||||||| |||||||||||   |||||||||||| | | |||||||||||||||||||    
T  5525147 tggtttttgcattggaataacaacacaccatgctgctttagatggaaaatcttcaacca 5525205  T

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