View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1968_1D_low_10 (Length: 443)
Name: NF1968_1D_low_10
Description: NF1968_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1968_1D_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 25 - 430
Target Start/End: Complemental strand, 38882005 - 38881601
Alignment:
| Q |
25 |
gttaatgtgtgagtgagcgaaatagatggaggggagtagcaacaatttataaggaactaaaaacacatgcaagaaataaatgtgagtttaagcttatcac |
124 |
Q |
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| T |
38882005 |
gttaatgtgttagtgagcgaaatagatggaggg-agtggcaacaatttataaggaactaaaaacacatgcaagaaataaatgtgagttta-gcttaccac |
38881908 |
T |
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| Q |
125 |
aacaaacaaaatattccacccgcatatacttccttctaatgcggtgttcagttagcctagtaaaccgactcaaagtaatatataccatatgcgtgatatc |
224 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||||||||||||||||||||||||||||| ||||| |
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| T |
38881907 |
aacaaacaaaatattccacccgcatatacttccttctaatgcggtgttcagttaaccaagtgaaccgactcaaagtaatatataccatatgcgtcatatc |
38881808 |
T |
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| Q |
225 |
atggctggtatgatagaatctgggtgactacgccgtgannnnnnncaaaaactacattttatagcttctataaaatcaaatcatcgtaatattcacataa |
324 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38881807 |
atggctggtatgatagaatctgggtgactacgccgtgattttttttaaaaactacattttatagcttctataaaatcaaatcatcgtaatattcacataa |
38881708 |
T |
|
| Q |
325 |
tatatcaccatgatattaaaaatacacgcaatagacactgtttccagaaa-ctctttgtcactttagtgctcttgcgtctatggcatgatgattgttgat |
423 |
Q |
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|||||||||||||| | ||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||| |
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| T |
38881707 |
tatatcaccatgatgtcaaacatacacgcaatagacactgtttccagaaacctctttgtaactttagtgctcttgcgtctatggcatgatgaatgttgat |
38881608 |
T |
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| Q |
424 |
gtccatc |
430 |
Q |
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| T |
38881607 |
gaccatc |
38881601 |
T |
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