View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1968_1D_low_12 (Length: 383)
Name: NF1968_1D_low_12
Description: NF1968_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1968_1D_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 240; Significance: 1e-133; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 22 - 381
Target Start/End: Original strand, 4234021 - 4234380
Alignment:
| Q |
22 |
gttcccaaatgaaaaaggaaacgaaagatgcttgaagattttagcttttgaaccaaagctcgaagactctcttcgtgctacgttcaagctcacacatgaa |
121 |
Q |
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||||||||||||||||||||| |||||| |||||||||||||| ||||||||||||| |||||||||| | ||||| |||| ||||||||||||| |||| |
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| T |
4234021 |
gttcccaaatgaaaaaggaaatgaaagaagcttgaagattttaccttttgaaccaaaactcgaagactatgttcgttctacattcaagctcacacgtgaa |
4234120 |
T |
|
| Q |
122 |
gatttgaacaagataaagcaaatggtgttatcaaaatgggaattattggacacaaatgaattaaattctaagccacccactttatcatcgtttgttctca |
221 |
Q |
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|||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |||||||||||| ||||||||||| |||||||||| |
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| T |
4234121 |
gatttgaataagataaagcaaatggtattatcaaaatgggaattattggacacgaatgaattaacttctaagccaccaactttatcatcttttgttctca |
4234220 |
T |
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| Q |
222 |
catgtgcttatgcccttgtttgtttggcaaaagctattcatggaattaaaatggagaaagagaagtttgcatttggattcaccgtagattgcagagcaag |
321 |
Q |
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| T |
4234221 |
cttgtgcttactcgcttgtttgtttggcaaaagcaattcatggagttgaaaaggagaaagagaagtttgggtttgcattcaccgtagattgcagagcaag |
4234320 |
T |
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| Q |
322 |
gttagagccatcactaccaaataactattttggaaattgtgtatggggacatttggttga |
381 |
Q |
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| T |
4234321 |
gttagagccaccactaccaaataactattttggaaactgcgtatggggacatttagttga |
4234380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 195 - 381
Target Start/End: Original strand, 4210530 - 4210716
Alignment:
| Q |
195 |
cacccactttatcatcgtttgttctcacatgtgcttatgcccttgtttgtttggcaaaagctattcatggaattaaaatggagaaagagaagtttgcatt |
294 |
Q |
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| T |
4210530 |
cacccactttatcatcgtttgttctcacatgttcttatgcccttgtttgtttggcaaaagcaattcatggaattaaaatggagaaagagaagtttgcatt |
4210629 |
T |
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| Q |
295 |
tggattcaccgtagattgcagagcaaggttagagccatcactaccaaataactattttggaaattgtgtatggggacatttggttga |
381 |
Q |
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| T |
4210630 |
tggattcaccgtagattgcagagcaaggttagagccatcactaccaaataactattttggaaattgtgtatggggacatttggttga |
4210716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 22 - 199
Target Start/End: Original strand, 4196278 - 4196455
Alignment:
| Q |
22 |
gttcccaaatgaaaaaggaaacgaaagatgcttgaagattttagcttttgaaccaaagctcgaagactctcttcgtgctacgttcaagctcacacatgaa |
121 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |
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| T |
4196278 |
gttcccaaatgaaaaaggaaacgaaagatgcttgaagattttagcttttgaaccaaacctcgaagactctcttcgtgctacgttcaagctcacacgtgaa |
4196377 |
T |
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| Q |
122 |
gatttgaacaagataaagcaaatggtgttatcaaaatgggaattattggacacaaatgaattaaattctaagccaccc |
199 |
Q |
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| T |
4196378 |
gatttgaacaagataaagcaaatggtgttaacaaaatgggaattattggacacaaatgaattaaattctaagccaccc |
4196455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 23 - 369
Target Start/End: Original strand, 4189390 - 4189736
Alignment:
| Q |
23 |
ttcccaaatgaaaaaggaaacgaaagatgcttgaagattttagcttttgaaccaaagctcgaagactctcttcgtgctacgttcaagctcacacatgaag |
122 |
Q |
| |
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||||||| ||||||||||||||| |||| || |||||| ||||||||||| || |||||||| ||||||| || ||||| ||||| | ||||| |
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| T |
4189390 |
ttcccaagcgaaaaaggaaacgaacatagcttaaatattttacactttgaaccaaaacttgaagactccgttcgtgccacattcaatctcacgcgtgaag |
4189489 |
T |
|
| Q |
123 |
atttgaacaagataaagcaaatggtgttatcaaaatgggaattattggacacaaatgaattaaattctaagccacccactttatcatcgtttgttctcac |
222 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| | || |||||||||| | |||| ||||||| ||||||||||| ||||||||||| |
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| T |
4189490 |
atttgaacaagataaagcaaatggtgttatcaaaatgggaattttatgatacaaatgaatcatattcaaagccacaaactttatcatcttttgttctcac |
4189589 |
T |
|
| Q |
223 |
atgtgcttatgcccttgtttgtttggcaaaagctattcatggaattaaaatggagaaagagaagtttgcatttggattcaccgtagattgcagagcaagg |
322 |
Q |
| |
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||||||||| | || ||||||| |||||||| ||||| || | ||||||||||| |||||| | |||| |||||||||||||||||||||||| |
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| T |
4189590 |
ttgtgcttattcactcgtttgttatgcaaaagcgattcaccgagcagatatggagaaagaaaagttttcttttgctttcaccgtagattgcagagcaagg |
4189689 |
T |
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| Q |
323 |
ttagagccatcactaccaaataactattttggaaattgtgtatgggg |
369 |
Q |
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||||| ||| || |||||| ||||||||||||||| ||||| ||||| |
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| T |
4189690 |
ttagaaccaccaataccaagtaactattttggaaactgtgtttgggg |
4189736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 68 - 381
Target Start/End: Original strand, 4192555 - 4192868
Alignment:
| Q |
68 |
tttgaaccaaagctcgaagactctcttcgtgctacgttcaagctcacacatgaagatttgaacaagataaagcaaatggtgttatcaaaatgggaattat |
167 |
Q |
| |
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||||||||||| ||| ||||||| ||||||| |||||||| ||||| | ||||||||||| |||||||||||||||||| | |||||||| |||| | |
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| T |
4192555 |
tttgaaccaaaactcaaagactcagttcgtgccacgttcaatctcacgcttgaagatttgatcaagataaagcaaatggtatcatcaaaattggaagttg |
4192654 |
T |
|
| Q |
168 |
tggacacaaatgaattaaattctaagccacccactttatcatcgtttgttctcacatgtgcttatgcccttgtttgtttggcaaaagctattcatggaat |
267 |
Q |
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| || | |||||||| ||||| ||||||| |||||||| | ||||||||||| ||||| ||| | |||||||||||||||||||| ||||||||| |
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| T |
4192655 |
ttgataaaaatgaatcaaatttaaagccacaatctttatcagcttttgttctcacttgtgcatattcgcttgtttgtttggcaaaagcgattcatggagc |
4192754 |
T |
|
| Q |
268 |
taaaatggagaaagagaagtttgcatttggattcaccgtagattgcagagcaaggttagagccatcactaccaaataactattttggaaattgtgtatgg |
367 |
Q |
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| | ||||||||| |||||| | |||| ||| || ||||||||||| |||||||||| ||| || |||||||||||||||||||||| ||||| ||| |
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| T |
4192755 |
tgctaaggagaaagataagttttcttttgctttccccatagattgcagatcaaggttagaaccaccaataccaaataactattttggaaactgtgtctgg |
4192854 |
T |
|
| Q |
368 |
ggacatttggttga |
381 |
Q |
| |
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|| ||||| ||||| |
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| T |
4192855 |
gggcattttgttga |
4192868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 23 - 368
Target Start/End: Original strand, 4251038 - 4251377
Alignment:
| Q |
23 |
ttcccaaatgaaaaaggaaacgaaagatgcttgaagattttagcttttgaaccaaagctcgaagactctcttcgtgctacgttcaagctcacacatgaag |
122 |
Q |
| |
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||||||| |||||||||||| || ||| |||| |||||||| | ||||||||| | |||||||||||| |||||||||| || ||||||| |||||||| |
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| T |
4251038 |
ttcccaagtgaaaaaggaaatgatagaagcttaaagattttcccatttgaaccacaactcgaagactctgttcgtgctacttttaagctcaaacatgaag |
4251137 |
T |
|
| Q |
123 |
atttgaacaagataaagcaaatggtgttatcaaaatgggaattattggacacaaatgaattaaattctaagccacccactttatcatcgtttgttctcac |
222 |
Q |
| |
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||||| | ||||||||||||| |||||||| | ||||||| |||| || || || ||| || ||||||| ||| ||||||| ||||| |||| |
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| T |
4251138 |
atttggataagataaagcaaagagtgttatctacatgggaaatattcgatacgaaagaa------tcaaagccacaaactctatcatcatttgtcatcac |
4251231 |
T |
|
| Q |
223 |
atgtgcttatgcccttgtttgtttggcaaaagctattcatggaattaaaatggagaaagagaagtttgcatttggattcaccgtagattgcagagcaagg |
322 |
Q |
| |
|
||||||||| | || |||||| | |||||||| |||||||| | | | || |||||||||||| | |||| |||| ||||||||||||||||||| |
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| T |
4251232 |
ttgtgcttattcgctcgtttgtgttgcaaaagcgattcatggggctcataatgacaaagagaagttttcttttgtgttcagcgtagattgcagagcaagg |
4251331 |
T |
|
| Q |
323 |
ttagagccatcactaccaaataactattttggaaattgtgtatggg |
368 |
Q |
| |
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||||| ||| || |||||||||||||| ||||||| ||||| |||| |
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| T |
4251332 |
ttagaaccaacaataccaaataactatcttggaaactgtgtttggg |
4251377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 33 - 163
Target Start/End: Original strand, 4246613 - 4246743
Alignment:
| Q |
33 |
aaaaaggaaacgaaagatgcttgaagattttagcttttgaaccaaagctcgaagactctcttcgtgctacgttcaagctcacacatgaagatttgaacaa |
132 |
Q |
| |
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||||| |||| |||||| |||| |||| ||| |||||||||||| ||| |||||| | |||| ||||| || | |||| ||| ||||||||| | || |
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| T |
4246613 |
aaaaaagaaatgaaagaagcttaaagaatttccattttgaaccaaaactcaaagactgtgttcgcgctacttttgaactcaaacacgaagatttggataa |
4246712 |
T |
|
| Q |
133 |
gataaagcaaatggtgttatcaaaatgggaa |
163 |
Q |
| |
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||||||||||| ||||||||||| ||||||| |
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| T |
4246713 |
gataaagcaaagggtgttatcaacatgggaa |
4246743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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