View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1968_1D_low_13 (Length: 379)
Name: NF1968_1D_low_13
Description: NF1968_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1968_1D_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 140; Significance: 3e-73; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 9 - 180
Target Start/End: Original strand, 6814235 - 6814405
Alignment:
| Q |
9 |
atgtgctgcacagtctaaattcaaaacattctacactttctccctcagctaacttgcttttactttcggtgtaagataagtatttttgtttatgaagggt |
108 |
Q |
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| T |
6814235 |
atgtgctgcacagtctaaattcaaaacattctacactttctccctcagctaacttgcttttactttcaatgtaagataagtatttttgtttatgaagggt |
6814334 |
T |
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| Q |
109 |
actaggattccatctttctgtgcactaggattcacataatatctccctcacttttatcaataaattaaggac |
180 |
Q |
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| T |
6814335 |
actaggattccatccttttgt-tactaggattcacataatatctccctcacttttaccaataaattaaggac |
6814405 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 279 - 357
Target Start/End: Original strand, 6814704 - 6814782
Alignment:
| Q |
279 |
acatgctctgtaaagggattaagggactaatagtttcccttaggctttatgaattttagttggtgtctataaatttagt |
357 |
Q |
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| T |
6814704 |
acatgttctataaagggatgaagggactaatagtttcccttaggctttatgaattttagttggtgtctataaatttagt |
6814782 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 244 - 285
Target Start/End: Original strand, 6814469 - 6814510
Alignment:
| Q |
244 |
ccataacttctaaatcgtttatttttgtctcttaaacatgct |
285 |
Q |
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| T |
6814469 |
ccataacttctaaatcgtttatttttgtctcttaaacatgct |
6814510 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 60 - 124
Target Start/End: Original strand, 6820752 - 6820816
Alignment:
| Q |
60 |
acttgcttttactttcggtgtaagataagtatttttgtttatgaagggtactaggattccatctt |
124 |
Q |
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| T |
6820752 |
acttgattttcctttcagtgtaagacaagcatttttgttaatgaagggtattaggattccatctt |
6820816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 45 - 120
Target Start/End: Original strand, 6835396 - 6835471
Alignment:
| Q |
45 |
tttctccctcagctaacttgcttttactttcggtgtaagataagtatttttgtttatgaagggtactaggattcca |
120 |
Q |
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| T |
6835396 |
tttctcccttaattaacttgcttttcccttcagtgtaagataagcatttttgttgatgaaggggacttggattcca |
6835471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 324 - 360
Target Start/End: Original strand, 6821566 - 6821602
Alignment:
| Q |
324 |
tttatgaattttagttggtgtctataaatttagtgat |
360 |
Q |
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| T |
6821566 |
tttatgaattttagttggtgtctataaatttaatgat |
6821602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 324 - 360
Target Start/End: Original strand, 6830040 - 6830076
Alignment:
| Q |
324 |
tttatgaattttagttggtgtctataaatttagtgat |
360 |
Q |
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| T |
6830040 |
tttatgagttttagttggcgtctataaatttagtgat |
6830076 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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