View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1968_1D_low_15 (Length: 360)
Name: NF1968_1D_low_15
Description: NF1968_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1968_1D_low_15 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 2 - 360
Target Start/End: Original strand, 10586248 - 10586605
Alignment:
| Q |
2 |
aagtttcttatatgcatatttatagaaaaatatttgcaaactgtggcttaaacaaagaatacaagttcttgctcacttcagcatagaagtctaagtctca |
101 |
Q |
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| T |
10586248 |
aagtttcttatatgcatatttatagaaaaatatttgcaaactgtggcttaaacaaagaattcaagttcttgctcacttcagcatagaagtctaagtctca |
10586347 |
T |
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| Q |
102 |
aaatttgggtgcatgaagtttccnnnnnnnnnnnnncagtttatggagaggattgttggccgtggttaataagcactgtcaaatatcaaaattaaagcac |
201 |
Q |
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| T |
10586348 |
aaatttgggtgcatgaagtttcctttttaattttt-cagtttatggagaggattgttggccgtggttaataagcactgtcaaatatcaaaattaaagcac |
10586446 |
T |
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| Q |
202 |
ttctgagagactgtgaacctccaagtccgattcatattgaaatttcatcacttgagtgttatcttaatctcactacttaacaacatatgttgggccacat |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10586447 |
ttctgagagactgtgaacctccaagtccgattcatattgaaatttcatcacttgagtgttatcttaatctcactacttaacaacatatgttgggccacat |
10586546 |
T |
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| Q |
302 |
taagttgctcatcatggtaagttaatctacaaatataagtagcaccaaacctagctgtg |
360 |
Q |
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| T |
10586547 |
taagttgctcatcatggtaagttaatctacaaatataagtagcaccaaacctagctgtg |
10586605 |
T |
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