View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1968_1D_low_3 (Length: 589)
Name: NF1968_1D_low_3
Description: NF1968_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1968_1D_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 534; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 534; E-Value: 0
Query Start/End: Original strand, 25 - 574
Target Start/End: Complemental strand, 3532566 - 3532017
Alignment:
| Q |
25 |
atgacaatgcttccactactgccgtcttgttagctccctctgccaccacacaccacgccttccctttataatcatctggtggcggcaatggcttatattc |
124 |
Q |
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| T |
3532566 |
atgacaatgcttccactactgccgtcttgttagctccctctgccaccacacaccacgccttccctttataatcatctggtggcggcaatggcttatattc |
3532467 |
T |
|
| Q |
125 |
gtactctggcgtctttccagaaaggtcaatctcataaatacgtgacccatttggatacaataacccgaagtgacgctctgtacccaaaccagttttcaaa |
224 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |
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| T |
3532466 |
gtactctggcgtctttccagaaaggtcaatctcataaatacgtgacccatttggatacaataacccgaagtgacgctccgtacccaaacccgttttcaaa |
3532367 |
T |
|
| Q |
225 |
ttctcattatacaaagcaaatataaaagatggaagaattgaaccaggtcgagccggtgtcccaaccagaggttttttcgtaacctttttcacgaaatttc |
324 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
3532366 |
ttctcattatacaaagcaaatataaaagatggaagaattgaaccaggtcgagccggtgtcccaaccggaggttttttcgtaacctttttcacgaaatttc |
3532267 |
T |
|
| Q |
325 |
tattatatgtaccggcattgtgaatatttgcaccaatttggtcaaagtcaccatcattaggccaaccggtttcagcgataaatatttgaatatccggata |
424 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3532266 |
tattatatgtaccggcattgtgaatatttgcaccaatttggtccaagtcaccatcattaggccaaccggtttcagcgataaatatttgaatatccggata |
3532167 |
T |
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| Q |
425 |
gccaagccgctccattgcaaaataaaccgcatccaccatctgatcaaacaaattagtataaaccaaacccgtacccgaatccgtaaccgtgatgttatcg |
524 |
Q |
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| T |
3532166 |
gccaagccgctccattgcaaaataaaccgcatccaccatctgatcaaacaaattagtataaaccaaacccgtacccgaatccgtaaccgtgatgttatcg |
3532067 |
T |
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| Q |
525 |
gattcaaaaagagcataatccaagttaatattaataggatctgatgtcca |
574 |
Q |
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| T |
3532066 |
gattcaaaaagagcataatccaagttaatattaataggatctgatgtcca |
3532017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 128; Significance: 7e-66; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 135 - 514
Target Start/End: Complemental strand, 18858936 - 18858557
Alignment:
| Q |
135 |
gtctttccagaaaggtcaatctcataaatacgtgacccatttggatacaataacccgaagtgacgctctgtacccaaaccagttttcaaattctcattat |
234 |
Q |
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||||| || ||||| ||||| ||||||| | ||||| || |||||||||| ||| || || ||||| |||||| ||| | ||| | |||||||||| |
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| T |
18858936 |
gtcttccccgaaagatcaatgtcataaaccctagacccgttcggatacaatagcccaaaatgccgctccgtacccggacccggtttaatattctcattaa |
18858837 |
T |
|
| Q |
235 |
acaaagcaaatataaaagatggaagaattgaaccaggtcgagccggtgtcccaaccagaggttttttcgtaacctttttcacgaaatttctattatatgt |
334 |
Q |
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|||||||||||| |||| |||||||| |||| |||||||| ||||||||||| | ||||||||| |||| ||||| || |||||||||||||| || |
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| T |
18858836 |
acaaagcaaataaaaaactcggaagaatcaaacccggtcgagctggtgtcccaacaatcggttttttcataacttttttaacaaaatttctattataagt |
18858737 |
T |
|
| Q |
335 |
accggcattgtgaatatttgcaccaatttggtcaaagtcaccatcattaggccaaccggtttcagcgataaatatttgaatatccggatagccaagccgc |
434 |
Q |
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| | ||||| || ||| ||||| ||||| |||| |||||| ||||||||||||| ||||| ||||||||||| ||||||||||| | ||||| | |
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| T |
18858736 |
agcagcattaaaaacattagcaccgatttgatcaacatcaccaccattaggccaacccgtttccgcgataaatatccgaatatccggaaacccaagtttc |
18858637 |
T |
|
| Q |
435 |
tccattgcaaaataaaccgcatccaccatctgatcaaacaaattagtataaaccaaacccgtacccgaatccgtaaccgt |
514 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |||| ||||||| |
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| T |
18858636 |
tccattgcaaaataaaccgcatccaccatctgatcaaacaaattcgtataaaccaaacccgaacccggatccttaaccgt |
18858557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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