View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1968_1D_low_30 (Length: 251)
Name: NF1968_1D_low_30
Description: NF1968_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1968_1D_low_30 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 21 - 251
Target Start/End: Complemental strand, 42635099 - 42634869
Alignment:
| Q |
21 |
tcacaagatacactttgaccaaattgatgagattttgattcctttgtaggggtcaaattctgactataataataatcaggatcacttgtggagtgaaaga |
120 |
Q |
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| T |
42635099 |
tcacaagatacactttgaccaaattgatgagattttgattcctttgtaggggtcaaattctgactataataataatcaggatcacttgtggagtgaaaga |
42635000 |
T |
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| Q |
121 |
tgtttctgcgttttgtgttgatgtgttgttttcccgaatcaatttcgacaatcctatcacttttttcgtcactcctgctatatgttcttatcagcgatct |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
42634999 |
tgtttctgcgttttgtgttgatgtgttgttttcccgaatcaatttcgacaatcctatcacttttttcgtcactcctgctatatgttcttatcagtgatct |
42634900 |
T |
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| Q |
221 |
tactctattccatgattgttcgtctaactga |
251 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
42634899 |
tactctattccatgattgttcgtctaactga |
42634869 |
T |
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