View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1968_1D_low_31 (Length: 238)

Name: NF1968_1D_low_31
Description: NF1968_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1968_1D_low_31
NF1968_1D_low_31
[»] chr2 (24 HSPs)
chr2 (18-235)||(9320710-9320926)
chr2 (55-238)||(12012747-12012927)
chr2 (18-235)||(9328329-9328543)
chr2 (55-236)||(11987684-11987865)
chr2 (54-234)||(9291685-9291865)
chr2 (54-237)||(9284386-9284570)
chr2 (68-226)||(9274277-9274435)
chr2 (67-237)||(9315795-9315965)
chr2 (55-238)||(12006313-12006496)
chr2 (82-234)||(8573725-8573877)
chr2 (84-237)||(10335649-10335802)
chr2 (55-231)||(12019090-12019266)
chr2 (61-227)||(10352879-10353045)
chr2 (67-234)||(9061358-9061522)
chr2 (82-234)||(10347552-10347707)
chr2 (62-169)||(7115933-7116040)
chr2 (82-234)||(10371625-10371780)
chr2 (82-232)||(10341140-10341293)
chr2 (54-153)||(9294920-9295020)
chr2 (105-235)||(9065812-9065942)
chr2 (178-238)||(16268955-16269015)
chr2 (115-237)||(8579701-8579823)
chr2 (178-234)||(7115844-7115900)
chr2 (105-165)||(9364442-9364502)
[»] scaffold0667 (1 HSPs)
scaffold0667 (67-238)||(4229-4397)
[»] chr8 (1 HSPs)
chr8 (113-230)||(41966911-41967028)
[»] chr3 (1 HSPs)
chr3 (70-233)||(37462244-37462410)
[»] chr1 (4 HSPs)
chr1 (127-235)||(29453502-29453610)
chr1 (127-235)||(29423101-29423209)
chr1 (127-235)||(29467978-29468086)
chr1 (178-235)||(29443519-29443576)
[»] chr7 (2 HSPs)
chr7 (178-234)||(45230295-45230351)
chr7 (178-234)||(45243557-45243613)


Alignment Details
Target: chr2 (Bit Score: 134; Significance: 7e-70; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 18 - 235
Target Start/End: Original strand, 9320710 - 9320926
Alignment:
Q  18 catcaactaatacatagcaaaaactcaataaactaggataatgaataaaaagtaccttttcttgctcttgcttgtatgattctccttcttcctagaatta 117  Q
    |||||||||||||||||||||||||||| ||||||| ||||| || || ||||||||| || |||||||||||||| |||||||||||||| ||||||||    
T  9320710 catcaactaatacatagcaaaaactcaaaaaactagtataatcaa-aacaagtaccttctcatgctcttgcttgtacgattctccttcttcttagaatta 9320808  T
Q  118 tcaacaggaaaggaaggtggtacaagacttccaacactaatcttagctccatcgaaatcgggaattccttcaacataactaacttgttcagtattcaaat 217  Q
    |||||||| ||||||||||| |||||||||||||||| || | || |||||| |||||| ||||||||||||||||||||||||||| || | |||||||    
T  9320809 tcaacagggaaggaaggtgggacaagacttccaacacaaaacataactccatggaaatcaggaattccttcaacataactaacttgtgcactcttcaaat 9320908  T
Q  218 cataccaaaacagcttct 235  Q
    ||||||||||||||||||    
T  9320909 cataccaaaacagcttct 9320926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 55 - 238
Target Start/End: Complemental strand, 12012927 - 12012747
Alignment:
Q  55 ataatgaataaaaagtaccttttcttgctcttgcttgtatgattctccttcttcctagaattatcaacaggaaaggaaggtggtacaagacttccaacac 154  Q
    ||||| ||||| ||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  12012927 ataatcaataagaagtaccttctcttgctcttgcttgaatgattccccttcttcctagaattatcaacagggaaggagggtggtacaagacttccaacac 12012828  T
Q  155 taatcttagctccatcgaaatcgggaattccttcaacataactaacttgttcagtattcaaatcataccaaaacagcttcttat 238  Q
     |||| ||||| |||||||||  ||||||||||||||||||||||||||   | | |||||||||||||||| |||||||||||    
T  12012827 aaatcatagcttcatcgaaattaggaattccttcaacataactaacttg---actcttcaaatcataccaaaccagcttcttat 12012747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 18 - 235
Target Start/End: Original strand, 9328329 - 9328543
Alignment:
Q  18 catcaactaatacatagcaaaaactcaataaactaggataatgaataaaaagtaccttttcttgctcttgcttgtatgattctccttcttcctagaatta 117  Q
    |||||||| ||||||||||||||||||| |||||   ||||| || || ||||||||| ||||||||||||||||| |||||||||||||||||||||||    
T  9328329 catcaacttatacatagcaaaaactcaaaaaactc--ataatcaa-aagaagtaccttctcttgctcttgcttgtacgattctccttcttcctagaatta 9328425  T
Q  118 tcaacaggaaaggaaggtggtacaagacttccaacactaatcttagctccatcgaaatcgggaattccttcaacataactaacttgttcagtattcaaat 217  Q
    |||||||| |||||||||||||||||||||||||||  || | || |  ||| |||||| ||||||||||||||||||||||||||| || |  | ||||    
T  9328426 tcaacagggaaggaaggtggtacaagacttccaacagaaaacataacatcatggaaatcaggaattccttcaacataactaacttgtgcactcctaaaat 9328525  T
Q  218 cataccaaaacagcttct 235  Q
    ||||| ||||||||||||    
T  9328526 catacaaaaacagcttct 9328543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 55 - 236
Target Start/End: Complemental strand, 11987865 - 11987684
Alignment:
Q  55 ataatgaataaaaagtaccttttcttgctcttgcttgtatgattctccttcttcctagaattatcaacaggaaaggaaggtggtacaagacttccaacac 154  Q
    ||||| ||||| ||||||||| ||||| ||||||||| ||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  11987865 ataatcaataagaagtaccttctcttggtcttgcttgaatgattccccttcttcctagaattatcaacagggaaggagggtggtacaagacttccaacac 11987766  T
Q  155 taatcttagctccatcgaaatcgggaattccttcaacataactaacttgttcagtattcaaatcataccaaaacagcttctt 236  Q
     |||| ||||| ||||||| |  |||||||| ||||||||||||| ||||||| | |||||||||||||||| |||||||||    
T  11987765 aaatcatagcttcatcgaatttaggaattccgtcaacataactaaattgttcactcttcaaatcataccaaaccagcttctt 11987684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 54 - 234
Target Start/End: Original strand, 9291685 - 9291865
Alignment:
Q  54 gataatgaataaaaagtaccttttcttgctcttgcttgtatgattctccttcttcctagaattatcaacaggaaaggaaggtggtacaagacttccaaca 153  Q
    |||||| ||||| ||||||| |||||| |||||| | ||||||||||||||||||||| ||||||||||||| ||||||||||||| ||||||| |||||    
T  9291685 gataatcaataagaagtaccgtttctttctcttgttcgtatgattctccttcttcctacaattatcaacagggaaggaaggtggtagaagactttcaaca 9291784  T
Q  154 ctaatcttagctccatcgaaatcgggaattccttcaacataactaacttgttcagtattcaaatcataccaaaacagcttc 234  Q
    | |||| ||||| |||| ||||  |||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||    
T  9291785 caaatcatagcttcatccaaattaggaattccttcaacataactaatttgttcactcttcaaatcataccaaaacagcttc 9291865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 54 - 237
Target Start/End: Complemental strand, 9284570 - 9284386
Alignment:
Q  54 gataatgaataaa-aagtaccttttcttgctcttgcttgtatgattctccttcttcctagaattatcaacaggaaaggaaggtggtacaagacttccaac 152  Q
    |||||| |||||| ||||||||| ||||||||||||||  | ||||||||||||| ||||||||||||||||| ||||||||||| ||||||||| ||||    
T  9284570 gataatcaataaagaagtaccttctcttgctcttgcttaaacgattctccttcttactagaattatcaacagggaaggaaggtggcacaagactttcaac 9284471  T
Q  153 actaatcttagctccatcgaaatcgggaattccttcaacataactaacttgttcagtattcaaatcataccaaaacagcttctta 237  Q
    || |||| ||||| |||| ||||  |||||||||||||||||| ||||||| ||| | |||||||||||||||| ||||||||||    
T  9284470 acaaatcatagcttcatccaaattaggaattccttcaacataaataacttgctcactcttcaaatcataccaaaccagcttctta 9284386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 68 - 226
Target Start/End: Original strand, 9274277 - 9274435
Alignment:
Q  68 agtaccttttcttgctcttgcttgtatgattctccttcttcctagaattatcaacaggaaaggaaggtggtacaagacttccaacactaatcttagctcc 167  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||| | |||  ||| |||    
T  9274277 agtaccttttcttgctcttgcttgtatgattctccttcttcctagaattatcaacagggaaggagggtggtacaaaacttccaacccaaataatagttcc 9274376  T
Q  168 atcgaaatcgggaattccttcaacataactaacttgttcagtattcaaatcataccaaa 226  Q
    || ||| |  |||||||||| |||| |||||||||||||| | ||||||||||||||||    
T  9274377 attgaagttaggaattcctttaacaaaactaacttgttcactcttcaaatcataccaaa 9274435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 67 - 237
Target Start/End: Original strand, 9315795 - 9315965
Alignment:
Q  67 aagtaccttttcttgctcttgcttgtatgattctccttcttcctagaattatcaacaggaaaggaaggtggtacaagacttccaacactaatcttagctc 166  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||| |||||| |||| |||||     
T  9315795 aagtaccttctcttgttcttgcttgtatgattctccttcttcctacaataatcaacagggaaggaaggtggtacaagactttcaacacaaatcatagctt 9315894  T
Q  167 catcgaaatcgggaattccttcaacataactaacttgttcagtattcaaatcataccaaaacagcttctta 237  Q
    |||| ||||  | |||||||||||||||| ||||||||||| |  |||| ||| |||||||||||||||||    
T  9315895 catccaaattagaaattccttcaacataaataacttgttcactcatcaagtcacaccaaaacagcttctta 9315965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 55 - 238
Target Start/End: Complemental strand, 12006496 - 12006313
Alignment:
Q  55 ataatgaataaaaagtaccttttcttgctcttgcttgtatgattctccttcttcctagaattatcaacaggaaaggaaggtggtacaagacttccaacac 154  Q
    ||||| ||||| ||||||||| ||||||||||||||||| |||||||||||||| || |||| |||||||| ||||||||  ||||||||||||||||||    
T  12006496 ataatcaataagaagtaccttctcttgctcttgcttgtacgattctccttcttcgtacaattctcaacagggaaggaaggcagtacaagacttccaacac 12006397  T
Q  155 taatcttagctccatcgaaatcgggaattccttcaacataactaacttgttcagtattcaaatcataccaaaacagcttcttat 238  Q
     |||| | ||| |||||||||  |||||||| ||||  ||| |||||| |||| | |||||||||||||||| |||||||||||    
T  12006396 aaatcatcgcttcatcgaaatttggaattccctcaatgtaattaacttcttcactcttcaaatcataccaaaccagcttcttat 12006313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 82 - 234
Target Start/End: Complemental strand, 8573877 - 8573725
Alignment:
Q  82 ctcttgcttgtatgattctccttcttcctagaattatcaacaggaaaggaaggtggtacaagacttccaacactaatcttagctccatcgaaatcgggaa 181  Q
    ||||||||||||  |||||||| ||||||| ||||||||||||| ||| |||||||||||||||||||||||| || | ||||| |||   |||  ||||    
T  8573877 ctcttgcttgtacaattctcctccttcctacaattatcaacagggaagaaaggtggtacaagacttccaacacaaaacatagctgcattccaattaggaa 8573778  T
Q  182 ttccttcaacataactaacttgttcagtattcaaatcataccaaaacagcttc 234  Q
    |||||||||||||||| ||||||||| | ||||||||||||||||||||||||    
T  8573777 ttccttcaacataactgacttgttcactcttcaaatcataccaaaacagcttc 8573725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 84 - 237
Target Start/End: Original strand, 10335649 - 10335802
Alignment:
Q  84 cttgcttgtatgattctccttcttcctagaattatcaacaggaaaggaaggtggtacaagacttccaacactaatcttagctccatcgaaatcgggaatt 183  Q
    |||||||||| |||||| ||||||||||  |||||||||||| ||||||||||  |||||||||||||||| |||| |||   |||| ||||  ||||||    
T  10335649 cttgcttgtacgattctgcttcttcctacgattatcaacaggtaaggaaggtgaaacaagacttccaacacaaatcatagtgtcatccaaattaggaatt 10335748  T
Q  184 ccttcaacataactaacttgttcagtattcaaatcataccaaaacagcttctta 237  Q
    |||||||||||||||| ||||||| | ||||||||||||||||||| |||||||    
T  10335749 ccttcaacataactaatttgttcactcttcaaatcataccaaaacaacttctta 10335802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 55 - 231
Target Start/End: Complemental strand, 12019266 - 12019090
Alignment:
Q  55 ataatgaataaaaagtaccttttcttgctcttgcttgtatgattctccttcttcctagaattatcaacaggaaaggaaggtggtacaagacttccaacac 154  Q
    ||||| ||||| ||||||||| |||||||||| |||||| ||||||||||| |   |  || |||| |||| ||||||||||||||||||||||||||||    
T  12019266 ataatcaataagaagtaccttctcttgctctttcttgtacgattctccttcgtatgattatcatcagcaggtaaggaaggtggtacaagacttccaacac 12019167  T
Q  155 taatcttagctccatcgaaatcgggaattccttcaacataactaacttgttcagtattcaaatcataccaaaacagc 231  Q
     |||| | ||| |||||||||  |||||||||||||||||||||||||| | | | |||||||||||||||| ||||    
T  12019166 aaatcatggcttcatcgaaattaggaattccttcaacataactaacttgctgactcttcaaatcataccaaaccagc 12019090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 61 - 227
Target Start/End: Original strand, 10352879 - 10353045
Alignment:
Q  61 aataaaaagtaccttttcttgctcttgcttgtatgattctccttcttcctagaattatcaacaggaaaggaaggtggtacaagacttccaacactaatct 160  Q
    ||||| ||||||||||||| ||||| ||||||| ||||||||| |||||||  |||||||||||| ||| |||||||||||||||||||||||| ||||     
T  10352879 aataagaagtaccttttctcgctctcgcttgtaggattctcctgcttcctacgattatcaacagggaagtaaggtggtacaagacttccaacacaaatca 10352978  T
Q  161 tagctccatcgaaatcgggaattccttcaacataactaacttgttcagtattcaaatcataccaaaa 227  Q
    |||   |||| ||||   ||||| ||| ||||||||||||||||| | | | |||||||||||||||    
T  10352979 tagtgtcatccaaattaagaatttcttgaacataactaacttgtttactctccaaatcataccaaaa 10353045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 67 - 234
Target Start/End: Complemental strand, 9061522 - 9061358
Alignment:
Q  67 aagtaccttttcttgctcttgcttgtatgattctccttcttcctagaattatcaacaggaaaggaaggtggtacaagacttccaacactaatcttagctc 166  Q
    ||||||||| ||||| ||||||||||| ||||||||||||| | ||   |||||||||| ||| |||||| ||| ||||||||||||  || | |||||     
T  9061522 aagtaccttctcttggtcttgcttgtacgattctccttcttacaag---tatcaacagggaagaaaggtgatacgagacttccaacataaaacatagctt 9061426  T
Q  167 catcgaaatcgggaattccttcaacataactaacttgttcagtattcaaatcataccaaaacagcttc 234  Q
    |||| ||||  |||||||||||||||||||||||||||||| | || | |||||||||||||||||||    
T  9061425 catcaaaattaggaattccttcaacataactaacttgttcactcttgagatcataccaaaacagcttc 9061358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 82 - 234
Target Start/End: Original strand, 10347552 - 10347707
Alignment:
Q  82 ctcttgcttgtatgattctccttcttcctagaattatcaacaggaaaggaaggtggtacaagacttccaacactaatcttagctccatcgaaat---cgg 178  Q
    |||||||||| |||||||||||||||||||  |||||||||||| ||||||||||| |||||||||||||||| || | ||| | |||  | ||     |    
T  10347552 ctcttgcttggatgattctccttcttcctacgattatcaacagggaaggaaggtgggacaagacttccaacacaaaacatagtttcattcatattaggag 10347651  T
Q  179 gaattccttcaacataactaacttgttcagtattcaaatcataccaaaacagcttc 234  Q
    ||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||    
T  10347652 gaattccttcaacataactaatttgttcactcttcaaatcataccaaaacagcttc 10347707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 62 - 169
Target Start/End: Complemental strand, 7116040 - 7115933
Alignment:
Q  62 ataaaaagtaccttttcttgctcttgcttgtatgattctccttcttcctagaattatcaacaggaaaggaaggtggtacaagacttccaacactaatctt 161  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| ||| ||| || ||||      
T  7116040 ataagaagtaccttctcttgctcttgcttgtatgattctccttcttcctacaattatcaacagggaaggaaggtggtacaaggctttcaaaacaaatcaa 7115941  T
Q  162 agctccat 169  Q
    ||||||||    
T  7115940 agctccat 7115933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 82 - 234
Target Start/End: Original strand, 10371625 - 10371780
Alignment:
Q  82 ctcttgcttgtatgattctccttcttcctagaattatcaaca-ggaaaggaag--gtggtacaagacttccaacactaatcttagctccatcgaaatcgg 178  Q
    ||||||||||||||||||||||||||||||  |||||||||| || ||||  |  ||||||||||||| ||||||| || | ||||  |||| ||||  |    
T  10371625 ctcttgcttgtatgattctccttcttcctaccattatcaacaaggtaagggggtggtggtacaagactaccaacacaaaccatagcatcatccaaattag 10371724  T
Q  179 gaattccttcaacataactaacttgttcagtattcaaatcataccaaaacagcttc 234  Q
     | |||||||||||||||||||||||||| | ||||||||||||||||||||||||    
T  10371725 aatttccttcaacataactaacttgttcactcttcaaatcataccaaaacagcttc 10371780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 82 - 232
Target Start/End: Original strand, 10341140 - 10341293
Alignment:
Q  82 ctcttgcttgtatgattctccttcttcctagaattatcaacaggaaaggaaggtggtacaagacttccaacactaatcttagctccatcgaaatcgggaa 181  Q
    |||||||||| | |||||||||||||||||  ||| |||||||| ||| |||||||||| | |||||||||||  ||| ||||  |||| ||||| ||||    
T  10341140 ctcttgcttgaaggattctccttcttcctacgattgtcaacagggaagaaaggtggtactatacttccaacacacatcatagcatcatccaaatcaggaa 10341239  T
Q  182 ttccttcaac---ataactaacttgttcagtattcaaatcataccaaaacagct 232  Q
    ||||||||||   |||||||||||||||| | | ||||||||||||||||||||    
T  10341240 ttccttcaacataataactaacttgttcactctccaaatcataccaaaacagct 10341293  T

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Target: chr2; HSP #19
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 54 - 153
Target Start/End: Complemental strand, 9295020 - 9294920
Alignment:
Q  54 gataatgaataaa-aagtaccttttcttgctcttgcttgtatgattctccttcttcctagaattatcaacaggaaaggaaggtggtacaagacttccaac 152  Q
    |||||| |||||| ||||||||| ||||||||||||||  | ||||||||||||| ||||||||||||||||| |||||||||| ||| |||||| ||||    
T  9295020 gataatcaataaagaagtaccttctcttgctcttgcttaaacgattctccttcttactagaattatcaacagggaaggaaggtgctacgagactttcaac 9294921  T
Q  153 a 153  Q
    |    
T  9294920 a 9294920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 105 - 235
Target Start/End: Complemental strand, 9065942 - 9065812
Alignment:
Q  105 cttcctagaattatcaacaggaaaggaaggtggtacaagacttccaacactaatcttagctccatcgaaatcgggaattccttcaacataactaacttgt 204  Q
    ||||||| ||||||||||||| ||||||| ||||||||||||| |||||| ||||  ||   |||   |||  |||| ||||||||||||| ||||||||    
T  9065942 cttcctacaattatcaacagggaaggaagttggtacaagactttcaacacaaatcacagtgtcattccaattaggaactccttcaacataaataacttgt 9065843  T
Q  205 tcagtattcaaatcataccaaaacagcttct 235  Q
    ||| | ||||||||||||||||| |||||||    
T  9065842 tcactcttcaaatcataccaaaagagcttct 9065812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 178 - 238
Target Start/End: Original strand, 16268955 - 16269015
Alignment:
Q  178 ggaattccttcaacataactaacttgttcagtattcaaatcataccaaaacagcttcttat 238  Q
    |||||||||||||||||||||||| ||||| | ||||||||||||||||||| ||||||||    
T  16268955 ggaattccttcaacataactaactcgttcactcttcaaatcataccaaaacaacttcttat 16269015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 115 - 237
Target Start/End: Complemental strand, 8579823 - 8579701
Alignment:
Q  115 ttatcaacaggaaaggaaggtggtacaagacttccaacactaatcttagctccatcgaaatcgggaattccttcaacataactaacttgttcagtattca 214  Q
    ||||||| ||| ||||||||||||| |||  ||||||||  |||| ||| | ||| |||||  |||||||||| |||| || |||||| |||| | || |    
T  8579823 ttatcaataggcaaggaaggtggtagaagggttccaacataaatcatagtttcattgaaattaggaattccttgaacacaagtaacttcttcacttttga 8579724  T
Q  215 aatcataccaaaacagcttctta 237  Q
     ||||||||||||||||||||||    
T  8579723 gatcataccaaaacagcttctta 8579701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 178 - 234
Target Start/End: Complemental strand, 7115900 - 7115844
Alignment:
Q  178 ggaattccttcaacataactaacttgttcagtattcaaatcataccaaaacagcttc 234  Q
    ||||||||||||||| |||||||||||||  | |||||||||||||||| |||||||    
T  7115900 ggaattccttcaacacaactaacttgttcgctcttcaaatcataccaaaccagcttc 7115844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 105 - 165
Target Start/End: Original strand, 9364442 - 9364502
Alignment:
Q  105 cttcctagaattatcaacaggaaaggaaggtggtacaagacttccaacactaatcttagct 165  Q
    ||||||| ||||||||||||| || ||||||||||||||||| ||||||| |||| |||||    
T  9364442 cttcctacaattatcaacaggtaaagaaggtggtacaagactaccaacacaaatcatagct 9364502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 67 - 238
Target Start/End: Original strand, 4229 - 4397
Alignment:
Q  67 aagtaccttttcttgctcttgcttgtatgattctccttcttcctagaattatcaacaggaaaggaaggtggtacaagacttccaacactaatcttagctc 166  Q
    |||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  4229 aagtaccttttcttgctcttgcatgtatgattctccttcttactagaattatcaacaggaaaggaaggtggtacaagacttccaacacaaatcttagctc 4328  T
Q  167 catcgaaatcgggaattccttcaacataactaacttgttcagtattcaaatcataccaaaacagcttcttat 238  Q
    ||| |||||| |||||| |||   ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  4329 cattgaaatcaggaatttctt---cataactaacttgttcagtcttcaaatcataccaaaacagcttcttat 4397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 113 - 230
Target Start/End: Complemental strand, 41967028 - 41966911
Alignment:
Q  113 aattatcaacaggaaaggaaggtggtacaagacttccaacactaatcttagctccatcgaaatcgggaattccttcaacataactaacttgttcagtatt 212  Q
    ||||| ||||||| |||||||||||||||||||||||||||| || | | ||| |||| ||||  |||||||||||||||||| ||| ||||||| | ||    
T  41967028 aattaacaacagggaaggaaggtggtacaagacttccaacacaaaacatggcttcatcaaaattaggaattccttcaacataagtaatttgttcactctt 41966929  T
Q  213 caaatcataccaaaacag 230  Q
    ||||||||||||||||||    
T  41966928 caaatcataccaaaacag 41966911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 70 - 233
Target Start/End: Original strand, 37462244 - 37462410
Alignment:
Q  70 taccttttcttgctcttgcttgtatgattctccttcttcctagaattatcaacaggaaaggaaggtggtacaagacttccaacactaatcttagc---tc 166  Q
    |||||| ||||||||||||||||    | ||||||||||||| ||||||||||||| || | ||||| |||||||||| |||||| |||| ||||   ||    
T  37462244 taccttctcttgctcttgcttgtcctgtcctccttcttcctacaattatcaacagggaaaggaggtgatacaagactttcaacacaaatcatagcagctc 37462343  T
Q  167 catcgaaatcgggaattccttcaacataactaacttgttcagtattcaaatcataccaaaacagctt 233  Q
    |||  ||||  |||| |||||||| |||||||||||||||| | ||| |||||||||||||||||||    
T  37462344 cattcaaattaggaactccttcaatataactaacttgttcactcttccaatcataccaaaacagctt 37462410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 127 - 235
Target Start/End: Complemental strand, 29453610 - 29453502
Alignment:
Q  127 aaggaaggtggtacaagacttccaacactaatcttagctccatcgaaatcgggaattccttcaacataactaacttgttcagtattcaaatcataccaaa 226  Q
    ||||||||||| |||||||||||||||| |||| |||||  ||||||||  ||||||||||||||| |||||||||||||| | || | |||||||||||    
T  29453610 aaggaaggtggcacaagacttccaacacaaatcatagcttgatcgaaattaggaattccttcaacacaactaacttgttcactcttgagatcataccaaa 29453511  T
Q  227 acagcttct 235  Q
    |||||||||    
T  29453510 acagcttct 29453502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 127 - 235
Target Start/End: Original strand, 29423101 - 29423209
Alignment:
Q  127 aaggaaggtggtacaagacttccaacactaatcttagctccatcgaaatcgggaattccttcaacataactaacttgttcagtattcaaatcataccaaa 226  Q
    |||||||||| ||||||||||||||||| |||| | |||  ||||||||  |||||||||| |||| |||||||||||||| | || | |||||||||||    
T  29423101 aaggaaggtgatacaagacttccaacacaaatcatggcttgatcgaaattaggaattccttgaacacaactaacttgttcactcttgagatcataccaaa 29423200  T
Q  227 acagcttct 235  Q
    |||||||||    
T  29423201 acagcttct 29423209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 127 - 235
Target Start/End: Complemental strand, 29468086 - 29467978
Alignment:
Q  127 aaggaaggtggtacaagacttccaacactaatcttagctccatcgaaatcgggaattccttcaacataactaacttgttcagtattcaaatcataccaaa 226  Q
    |||||||||||||||||||||||||||| |||| ||||| |||  ||||  |||||||||||||||||| |||| |||||| | || | |||||||||||    
T  29468086 aaggaaggtggtacaagacttccaacacaaatcatagcttcattcaaattaggaattccttcaacataattaacatgttcactcttgagatcataccaaa 29467987  T
Q  227 acagcttct 235  Q
    ||| |||||    
T  29467986 acaacttct 29467978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 235
Target Start/End: Complemental strand, 29443576 - 29443519
Alignment:
Q  178 ggaattccttcaacataactaacttgttcagtattcaaatcataccaaaacagcttct 235  Q
    |||||||||||||||||||||||   |||| | || | ||||||||||||||||||||    
T  29443576 ggaattccttcaacataactaacacattcactcttgagatcataccaaaacagcttct 29443519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 234
Target Start/End: Original strand, 45230295 - 45230351
Alignment:
Q  178 ggaattccttcaacataactaacttgttcagtattcaaatcataccaaaacagcttc 234  Q
    |||||||||| ||||| | ||||||||||| | || |||||||||||||||||||||    
T  45230295 ggaattccttgaacatgagtaacttgttcactcttgaaatcataccaaaacagcttc 45230351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 234
Target Start/End: Original strand, 45243557 - 45243613
Alignment:
Q  178 ggaattccttcaacataactaacttgttcagtattcaaatcataccaaaacagcttc 234  Q
    |||||||||| ||||||| ||| ||||||| | || | |||||||||||||||||||    
T  45243557 ggaattccttgaacataagtaagttgttcactgttgagatcataccaaaacagcttc 45243613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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