View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1968_1D_low_34 (Length: 231)

Name: NF1968_1D_low_34
Description: NF1968_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1968_1D_low_34
NF1968_1D_low_34
[»] chr2 (4 HSPs)
chr2 (19-182)||(10584866-10585034)
chr2 (172-216)||(10586169-10586213)
chr2 (135-193)||(37812512-37812575)
chr2 (165-201)||(19571023-19571059)
[»] chr8 (3 HSPs)
chr8 (134-193)||(7729948-7730012)
chr8 (165-201)||(37868397-37868433)
chr8 (165-201)||(37868632-37868668)
[»] chr4 (4 HSPs)
chr4 (137-200)||(20726840-20726908)
chr4 (135-164)||(990623-990652)
chr4 (165-198)||(21646314-21646347)
chr4 (135-164)||(45426935-45426964)
[»] chr5 (4 HSPs)
chr5 (137-215)||(17899476-17899558)
chr5 (132-162)||(37656728-37656758)
chr5 (132-161)||(37781840-37781869)
chr5 (165-201)||(60086-60122)
[»] chr7 (3 HSPs)
chr7 (116-162)||(6783116-6783164)
chr7 (135-163)||(12518169-12518197)
chr7 (134-162)||(43384278-43384306)
[»] chr1 (3 HSPs)
chr1 (133-162)||(28509384-28509413)
chr1 (165-201)||(31004486-31004522)
chr1 (165-201)||(31181562-31181598)
[»] chr3 (3 HSPs)
chr3 (136-164)||(22339817-22339845)
chr3 (130-162)||(49477405-49477437)
chr3 (130-162)||(49477612-49477644)


Alignment Details
Target: chr2 (Bit Score: 141; Significance: 4e-74; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 19 - 182
Target Start/End: Original strand, 10584866 - 10585034
Alignment:
Q  19 ctaatgactattgtcggtaatacttaagatacaggaaaaaatcaatttgaagcaaaaggagacaatatataaaatccatgtcaagattcttgttttaaaa 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  10584866 ctaatgactattgtcggtaatacttaagatacaggaaaaaatcaatttgaagcaaaaggagacgatatataaaatccatgtcaagattcttgttttaaaa 10584965  T
Q  119 gttaaaactcttaaaatggggcctaactcatccttacaaaaccgac-----aggtgaggattgccccca 182  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||     ||||||||||||||||||    
T  10584966 gttaaaactcttaaaatggggtctaactcatccttacaaaaccgacttgtgaggtgaggattgccccca 10585034  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 172 - 216
Target Start/End: Original strand, 10586169 - 10586213
Alignment:
Q  172 gattgcccccatttataaacacgtgttcagagccacattttgtcc 216  Q
    ||||||||||||||||||||||||||||| ||||| |||||||||    
T  10586169 gattgcccccatttataaacacgtgttcaaagccatattttgtcc 10586213  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 135 - 193
Target Start/End: Original strand, 37812512 - 37812575
Alignment:
Q  135 tggggcctaactcatccttacaaaaccgac-----aggtgaggattgcccccatttataaacac 193  Q
    ||||||||||||||||||||||||| ||||     |||||||||||||||||| ||||||||||    
T  37812512 tggggcctaactcatccttacaaaatcgacttgtgaggtgaggattgcccccacttataaacac 37812575  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 201
Target Start/End: Original strand, 19571023 - 19571059
Alignment:
Q  165 aggtgaggattgcccccatttataaacacgtgttcag 201  Q
    |||||||||||||||||| |||||||||| |||||||    
T  19571023 aggtgaggattgcccccacttataaacacatgttcag 19571059  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 134 - 193
Target Start/End: Complemental strand, 7730012 - 7729948
Alignment:
Q  134 atggggcctaactcatccttacaaaaccgac-----aggtgaggattgcccccatttataaacac 193  Q
    ||||||||||||||||||||||||||||| |     |||||||||||||||||| ||||||||||    
T  7730012 atggggcctaactcatccttacaaaaccggcttgtgaggtgaggattgcccccacttataaacac 7729948  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 201
Target Start/End: Original strand, 37868397 - 37868433
Alignment:
Q  165 aggtgaggattgcccccatttataaacacgtgttcag 201  Q
    |||||||||||||||||| | ||||||||||||||||    
T  37868397 aggtgaggattgcccccactaataaacacgtgttcag 37868433  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 201
Target Start/End: Original strand, 37868632 - 37868668
Alignment:
Q  165 aggtgaggattgcccccatttataaacacgtgttcag 201  Q
    |||||||||||||||||||| |||||||| |||||||    
T  37868632 aggtgaggattgcccccattaataaacacatgttcag 37868668  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 200
Target Start/End: Original strand, 20726840 - 20726908
Alignment:
Q  137 gggcctaactcatccttacaaaaccgac-----aggtgaggattgcccccatttataaacacgtgttca 200  Q
    |||||||||||||||||| ||||| |||     |||||||||||||||||| |||||||||| ||||||    
T  20726840 gggcctaactcatccttataaaactgactttggaggtgaggattgcccccacttataaacacatgttca 20726908  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 164
Target Start/End: Complemental strand, 990652 - 990623
Alignment:
Q  135 tggggcctaactcatccttacaaaaccgac 164  Q
    ||||||||||||||||||||||||||||||    
T  990652 tggggcctaactcatccttacaaaaccgac 990623  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 198
Target Start/End: Original strand, 21646314 - 21646347
Alignment:
Q  165 aggtgaggattgcccccatttataaacacgtgtt 198  Q
    ||||||||||||||||||||||||||||| ||||    
T  21646314 aggtgaggattgcccccatttataaacacatgtt 21646347  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 164
Target Start/End: Original strand, 45426935 - 45426964
Alignment:
Q  135 tggggcctaactcatccttacaaaaccgac 164  Q
    ||||||||||||||||||||||||||||||    
T  45426935 tggggcctaactcatccttacaaaaccgac 45426964  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 215
Target Start/End: Original strand, 17899476 - 17899558
Alignment:
Q  137 gggcctaactcatccttacaaaaccgac-----aggtgaggattgcccccatttataaacacgtgttcagagccacattttgtc 215  Q
    |||||||||||||||| |||||| || |     |||||||||||||||||| |||||||||| ||||||| |||| ||||||||    
T  17899476 gggcctaactcatcctcacaaaatcggctcatgaggtgaggattgcccccacttataaacacatgttcag-gccatattttgtc 17899558  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 162
Target Start/End: Original strand, 37656728 - 37656758
Alignment:
Q  132 aaatggggcctaactcatccttacaaaaccg 162  Q
    |||||||||||||||||||||||||||||||    
T  37656728 aaatggggcctaactcatccttacaaaaccg 37656758  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 161
Target Start/End: Original strand, 37781840 - 37781869
Alignment:
Q  132 aaatggggcctaactcatccttacaaaacc 161  Q
    ||||||||||||||||||||||||||||||    
T  37781840 aaatggggcctaactcatccttacaaaacc 37781869  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 201
Target Start/End: Complemental strand, 60122 - 60086
Alignment:
Q  165 aggtgaggattgcccccatttataaacacgtgttcag 201  Q
    |||||||||||||||||| |||||||||| |||||||    
T  60122 aggtgaggattgcccccacttataaacacatgttcag 60086  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 162
Target Start/End: Complemental strand, 6783164 - 6783116
Alignment:
Q  116 aaagttaaaactcttaaaat--ggggcctaactcatccttacaaaaccg 162  Q
    |||||||||||| || ||||  |||||||||||||||||||||||||||    
T  6783164 aaagttaaaactgttgaaatttggggcctaactcatccttacaaaaccg 6783116  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 163
Target Start/End: Original strand, 12518169 - 12518197
Alignment:
Q  135 tggggcctaactcatccttacaaaaccga 163  Q
    |||||||||||||||||||||||||||||    
T  12518169 tggggcctaactcatccttacaaaaccga 12518197  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 162
Target Start/End: Original strand, 43384278 - 43384306
Alignment:
Q  134 atggggcctaactcatccttacaaaaccg 162  Q
    |||||||||||||||||||||||||||||    
T  43384278 atggggcctaactcatccttacaaaaccg 43384306  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 162
Target Start/End: Original strand, 28509384 - 28509413
Alignment:
Q  133 aatggggcctaactcatccttacaaaaccg 162  Q
    ||||||||||||||||||||||||||||||    
T  28509384 aatggggcctaactcatccttacaaaaccg 28509413  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 201
Target Start/End: Original strand, 31004486 - 31004522
Alignment:
Q  165 aggtgaggattgcccccatttataaacacgtgttcag 201  Q
    |||||||||||||||||| |||||||||| |||||||    
T  31004486 aggtgaggattgcccccacttataaacacatgttcag 31004522  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 201
Target Start/End: Original strand, 31181562 - 31181598
Alignment:
Q  165 aggtgaggattgcccccatttataaacacgtgttcag 201  Q
    |||||||||||||||||| |||||||||| |||||||    
T  31181562 aggtgaggattgcccccacttataaacacatgttcag 31181598  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 164
Target Start/End: Complemental strand, 22339845 - 22339817
Alignment:
Q  136 ggggcctaactcatccttacaaaaccgac 164  Q
    |||||||||||||||||||||||||||||    
T  22339845 ggggcctaactcatccttacaaaaccgac 22339817  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 162
Target Start/End: Complemental strand, 49477437 - 49477405
Alignment:
Q  130 taaaatggggcctaactcatccttacaaaaccg 162  Q
    |||| ||||||||||||||||||||||||||||    
T  49477437 taaattggggcctaactcatccttacaaaaccg 49477405  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 162
Target Start/End: Complemental strand, 49477644 - 49477612
Alignment:
Q  130 taaaatggggcctaactcatccttacaaaaccg 162  Q
    |||| ||||||||||||||||||||||||||||    
T  49477644 taaattggggcctaactcatccttacaaaaccg 49477612  T

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