View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1968_1D_low_35 (Length: 228)
Name: NF1968_1D_low_35
Description: NF1968_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1968_1D_low_35 |
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| [»] scaffold2079 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 138; Significance: 3e-72; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 6326349 - 6326123
Alignment:
| Q |
1 |
gtgttgtactcatcaaaagagtttaacgaacaatggctgaattagaagctacaattccaaatgcaacttcaacttca------tcagattcaacaaggta |
94 |
Q |
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| T |
6326349 |
gtgttgtactcatcaaaagagtttaacgaacaatggctgaattagaagctacaattgcaaatgcaacttcaacttcaacttcatcagcttcaacaaggta |
6326250 |
T |
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| Q |
95 |
aataacttcaattatcaatcactactcaaacattaacttactctgtttccccnnnnnnnnagtagaaccctgtttttccattcaagnnnnnnnnnnagtc |
194 |
Q |
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| T |
6326249 |
aataacttcaattttcaatcactactcaaacattaacttactctgtttccccttttttttagtagaaccctgtttttccattcaagatttttttttagtc |
6326150 |
T |
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| Q |
195 |
aattgaagttcaatactagtataatat |
221 |
Q |
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| T |
6326149 |
aattgaagttcaatactagtataatat |
6326123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 6333832 - 6333717
Alignment:
| Q |
1 |
gtgttgtactcatcaaaag---agtttaacgaacaatggctgaattagaagctacaatt------ccaaatgcaacttcaacttcatcagattcaacaag |
91 |
Q |
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| T |
6333832 |
gtgttgtactcatcaaaagtttagtttgaagaacaatggctgaattaggagctacaattacaattccaaatgcaacttcaacttcatcagcttcaacaag |
6333733 |
T |
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| Q |
92 |
gtaaataacttcaatt |
107 |
Q |
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| T |
6333732 |
gtaaataacttcaatt |
6333717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 6242446 - 6242582
Alignment:
| Q |
1 |
gtgttgtactcatcaaaag---agtttaacgaacaatggctgaattagaagctacaattccaaatgcaacttcaactt------catcagattcaacaag |
91 |
Q |
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| T |
6242446 |
gtgttgtacttatcaaaagttaagtttgaagaacaacggcagaattaggagctacaattccaaatgcaacttgaacttgaacttcatcggattcaataag |
6242545 |
T |
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| Q |
92 |
gtaaataacttcaattatcaatcactactcaaacatt |
128 |
Q |
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| T |
6242546 |
gtaaataacttcaattttcaatcactactcaaacatt |
6242582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2079 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: scaffold2079
Description:
Target: scaffold2079; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 19 - 143
Target Start/End: Original strand, 686 - 810
Alignment:
| Q |
19 |
gagtttaacgaacaatggctgaattagaagctacaattccaaatgcaacttcaacttcatcagattcaacaaggtaaataacttcaattatcaatcacta |
118 |
Q |
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| T |
686 |
gagtttgaagaacaatggcagaattaggagctacaattccaaatgcaacttcaacttcatcagattcaacaaggtaaataacttcaattttcaatcacta |
785 |
T |
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| Q |
119 |
ctcaaacattaacttactctgtttc |
143 |
Q |
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| T |
786 |
ctcaaacattaacttactctgtttc |
810 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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