View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1968_1D_low_36 (Length: 225)
Name: NF1968_1D_low_36
Description: NF1968_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1968_1D_low_36 |
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| [»] scaffold0002 (1 HSPs) |
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| [»] scaffold0079 (1 HSPs) |
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Alignment Details
Target: scaffold0002 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 183389 - 183171
Alignment:
| Q |
1 |
gagtacgaggcgctcgggcgctgaagtaattgatgccatactcccaagaaaagctcgaacgaccttaaacaaaagggtacctgtacccgaaaccgacaca |
100 |
Q |
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|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
183389 |
gagtacgaggcgctccggcgctgaagtaattgatgccatactcccaagaaaagctcgaacgaccttaaacaaaagggtacctgtacccgaaaccgacaca |
183290 |
T |
|
| Q |
101 |
ggtgggtaggtagagaatacctaggggcgcgagacaactctctctaaggaactcggcaaaatagccccgtaacttcgggagaaggggtgcctcctcacaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
183289 |
ggtgggtaggtagagaatacctaggggcgcgagacaactctctctaaggaactcggcaaaatagccccgtaacttcgggagaaggggtgcctcctcacaa |
183190 |
T |
|
| Q |
201 |
agggggtcgcagtgaccag |
219 |
Q |
| |
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||||||||||||||||||| |
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| T |
183189 |
agggggtcgcagtgaccag |
183171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 494127 - 494345
Alignment:
| Q |
1 |
gagtacgaggcgctcgggcgctgaagtaattgatgccatactcccaagaaaagctcgaacgaccttaaacaaaagggtacctgtacccgaaaccgacaca |
100 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
494127 |
gagtacgaggcgctccggcgctgaagtaattgatgccatactcccaagaaaagctcgaacgaccttaaacaaaagggtacctgtacccgaaaccgacaca |
494226 |
T |
|
| Q |
101 |
ggtgggtaggtagagaatacctaggggcgcgagacaactctctctaaggaactcggcaaaatagccccgtaacttcgggagaaggggtgcctcctcacaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
494227 |
ggtgggtaggtagagaatacctaggggcgcgagacaactctctctaaggaactcggcaaaatagccccgtaacttcgggagaaggggtgcctcctcacaa |
494326 |
T |
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| Q |
201 |
agggggtcgcagtgaccag |
219 |
Q |
| |
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||||||||||||||||||| |
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| T |
494327 |
agggggtcgcagtgaccag |
494345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 18191789 - 18192007
Alignment:
| Q |
1 |
gagtacgaggcgctcgggcgctgaagtaattgatgccatactcccaagaaaagctcgaacgaccttaaacaaaagggtacctgtacccgaaaccgacaca |
100 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18191789 |
gagtacgaggcgctccggcgctgaagtaattgatgccatactcccaagaaaagctcgaacgaccttaaacaaaagggtacctgtacccgaaaccgacaca |
18191888 |
T |
|
| Q |
101 |
ggtgggtaggtagagaatacctaggggcgcgagacaactctctctaaggaactcggcaaaatagccccgtaacttcgggagaaggggtgcctcctcacaa |
200 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18191889 |
ggtgggtaggtacagaatacctaggggcgcgagacaactctctctaaggaactcggcaaaatagccccgtaacttcgggagaaggggtgcctcctcacaa |
18191988 |
T |
|
| Q |
201 |
agggggtcgcagtgaccag |
219 |
Q |
| |
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||||||||||||||||||| |
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| T |
18191989 |
agggggtcgcagtgaccag |
18192007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 141 - 219
Target Start/End: Complemental strand, 16337426 - 16337348
Alignment:
| Q |
141 |
tctctaaggaactcggcaaaatagccccgtaacttcgggagaaggggtgcctcctcacaaagggggtcgcagtgaccag |
219 |
Q |
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|
|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16337426 |
tctctaaggaactcggcaaactagccatgtaacttcgggagaaggggtgcctcctcacaaagggggtcgcagtgaccag |
16337348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 146 - 190
Target Start/End: Original strand, 42247850 - 42247894
Alignment:
| Q |
146 |
aaggaactcggcaaaatagccccgtaacttcgggagaaggggtgc |
190 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
42247850 |
aaggaactcggcaaaatgaccccgtaacttcgggagaaggggtgc |
42247894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 14404656 - 14404874
Alignment:
| Q |
1 |
gagtacgaggcgctcgggcgctgaagtaattgatgccatactcccaagaaaagctcgaacgaccttaaacaaaagggtacctgtacccgaaaccgacaca |
100 |
Q |
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|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14404656 |
gagtacgaggcgctccggcgctgaagtaattgatgccatactcccaagaaaagctcgaacgaccttaaacaaaagggtacctgtacccgaaaccgacaca |
14404755 |
T |
|
| Q |
101 |
ggtgggtaggtagagaatacctaggggcgcgagacaactctctctaaggaactcggcaaaatagccccgtaacttcgggagaaggggtgcctcctcacaa |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14404756 |
ggtgggtaggtagagaatacctaggggcgcgagacaactctctctaaggaactcggcaaaatagccccgtaacttcgggagaaggggtgcctcctcacaa |
14404855 |
T |
|
| Q |
201 |
agggggtcgcagtgaccag |
219 |
Q |
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||||||||||||||||||| |
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| T |
14404856 |
agggggtcgcagtgaccag |
14404874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 34659126 - 34659344
Alignment:
| Q |
1 |
gagtacgaggcgctcgggcgctgaagtaattgatgccatactcccaagaaaagctcgaacgaccttaaacaaaagggtacctgtacccgaaaccgacaca |
100 |
Q |
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|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
34659126 |
gagtacgaggcgctccggcgctgaagtaattgatgccatactcccaagaaaagctcgaacgaccttaaacaaaatggtacctgtacccgaaaccgacaca |
34659225 |
T |
|
| Q |
101 |
ggtgggtaggtagagaatacctaggggcgcgagacaactctctctaaggaactcggcaaaatagccccgtaacttcgggagaaggggtgcctcctcacaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34659226 |
ggtgggtaggtagagaatacctaggggcgcgagacaactctctctaaggaacttggcaaaatagccccgtaacttcgggagaaggggtgcctcctcacaa |
34659325 |
T |
|
| Q |
201 |
agggggtcgcagtgaccag |
219 |
Q |
| |
|
||||||||||||||||||| |
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| T |
34659326 |
agggggtcgcagtgaccag |
34659344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0079 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: scaffold0079
Description:
Target: scaffold0079; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 141 - 219
Target Start/End: Original strand, 55434 - 55512
Alignment:
| Q |
141 |
tctctaaggaactcggcaaaatagccccgtaacttcgggagaaggggtgcctcctcacaaagggggtcgcagtgaccag |
219 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55434 |
tctctaaggaactcggcaaactagccatgtaacttcgggagaaggggtgcctcctcacaaagggggtcgcagtgaccag |
55512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 100 - 171
Target Start/End: Complemental strand, 7869347 - 7869276
Alignment:
| Q |
100 |
aggtgggtaggtagagaatacctaggggcgcgagacaactctctctaaggaactcggcaaaatagccccgta |
171 |
Q |
| |
|
|||||||||||||||||||||||||| | | |||||||| |||||||||||||||| ||||||| |||||| |
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| T |
7869347 |
aggtgggtaggtagagaatacctaggagtgtgagacaaccctctctaaggaactcgataaaatagacccgta |
7869276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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