View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1968_1D_low_38 (Length: 218)
Name: NF1968_1D_low_38
Description: NF1968_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1968_1D_low_38 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 177; Significance: 1e-95; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 10586833 - 10587050
Alignment:
| Q |
1 |
attcatgcacagccattaatcaaagtaaatttgcatcttcaaataaatttctgaaaataaagaaatggttcaaaactgcagtacctcttggctctaaatg |
100 |
Q |
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| T |
10586833 |
attcatgcacagccattaatcaaagtaaatttgcatcttcaaataaatttctgaaaataaagaaatggttcaaaactgcagtacctcttggctctaaatg |
10586932 |
T |
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| Q |
101 |
ataactgatcagacatagctgcaagagcctgcatagtataagcatagaaagccgaaataacatatgctnnnnnnntgacaattccaatgagctctgctgc |
200 |
Q |
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| T |
10586933 |
ataactgatcagacatagctgcaagagcctgcatagtataagcatagaaagcccaaataacataagctaaaaaaatgacaattccaatgagctctgttgc |
10587032 |
T |
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| Q |
201 |
agaaacaagtccaaatgg |
218 |
Q |
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|||||||| |||||||| |
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| T |
10587033 |
agaaacaaccccaaatgg |
10587050 |
T |
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