View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1968_1D_low_43 (Length: 209)

Name: NF1968_1D_low_43
Description: NF1968_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1968_1D_low_43
NF1968_1D_low_43
[»] chr2 (1 HSPs)
chr2 (1-196)||(12698056-12698247)
[»] chr1 (4 HSPs)
chr1 (1-70)||(45077884-45077953)
chr1 (1-70)||(45082180-45082249)
chr1 (1-73)||(45067094-45067166)
chr1 (24-73)||(45074677-45074726)
[»] chr7 (1 HSPs)
chr7 (1-73)||(34504420-34504492)
[»] chr8 (1 HSPs)
chr8 (112-159)||(5934632-5934680)


Alignment Details
Target: chr2 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 12698056 - 12698247
Alignment:
Q  1 ggacattcaattcccttcgctagcagcaattcacatggtttaggaaccacgttacttgtaactccagaaacataacatcagtgcaattatgatatgaatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  12698056 ggacattcaattcccttcgctagcagcaattcacatggtttaggaaccacgttacttgtaactccagaaacataacatcagtgcaattatgatataaatt 12698155  T
Q  101 gtaaatgatattaatttatatgaaattttgatttggttaatattttaagtataaatattatgatctttaaattgtaacaaacctaataaatgatgt 196  Q
     ||||||||    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  12698156 ataaatgat----atttatatgaaattttgatttgattaatattttaagtataaatattatgatctttaaattgtaacaaacctaataaatcatgt 12698247  T

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Target: chr1 (Bit Score: 54; Significance: 3e-22; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 45077884 - 45077953
Alignment:
Q  1 ggacattcaattcccttcgctagcagcaattcacatggtttaggaaccacgttacttgtaactccagaaa 70  Q
    |||||||||||| ||||| || |||||||||||||||||||||||||||| |||||||||||||||||||    
T  45077884 ggacattcaatttccttctcttgcagcaattcacatggtttaggaaccacattacttgtaactccagaaa 45077953  T

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Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 45082180 - 45082249
Alignment:
Q  1 ggacattcaattcccttcgctagcagcaattcacatggtttaggaaccacgttacttgtaactccagaaa 70  Q
    |||||||||||| ||||| ||  ||||| ||||||||||||||||||||| |||||||||||||||||||    
T  45082180 ggacattcaatttccttctctttcagcagttcacatggtttaggaaccacattacttgtaactccagaaa 45082249  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 45067094 - 45067166
Alignment:
Q  1 ggacattcaattcccttcgctagcagcaattcacatggtttaggaaccacgttacttgtaactccagaaacat 73  Q
    |||||||| |||  |||| || ||||||  |||||||||||||||||| | ||||||| ||||||||||||||    
T  45067094 ggacattcgattttcttctctggcagcatatcacatggtttaggaaccgcattacttgcaactccagaaacat 45067166  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 24 - 73
Target Start/End: Original strand, 45074677 - 45074726
Alignment:
Q  24 cagcaattcacatggtttaggaaccacgttacttgtaactccagaaacat 73  Q
    |||||||||||| ||| |||||  ||| ||||||||||||||||||||||    
T  45074677 cagcaattcacagggtgtaggactcacattacttgtaactccagaaacat 45074726  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 34504420 - 34504492
Alignment:
Q  1 ggacattcaattcccttcgctagcagcaattcacatggtttaggaaccacgttacttgtaactccagaaacat 73  Q
    ||||||||||||  |||| ||  |||||  |||||||||||||||||||| ||||||||||||||||||||||    
T  34504420 ggacattcaattttcttctctgacagcagatcacatggtttaggaaccacattacttgtaactccagaaacat 34504492  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 159
Target Start/End: Original strand, 5934632 - 5934680
Alignment:
Q  112 taatttatatgaaattttga-tttggttaatattttaagtataaatatt 159  Q
    |||||||||||||||||||| |||| |||| ||| ||||||||||||||    
T  5934632 taatttatatgaaattttgattttgattaaaattataagtataaatatt 5934680  T

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