View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1968_1D_low_45 (Length: 205)
Name: NF1968_1D_low_45
Description: NF1968_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1968_1D_low_45 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 11 - 184
Target Start/End: Original strand, 1540254 - 1540422
Alignment:
| Q |
11 |
gagagattgttgtgatgtgtagttagttaaataaagatagtggagaattgtgaagtggagagtaatgaggggagtttaaagagaatgactcggtgtgtgt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1540254 |
gagagattgttgtgatgtgtagttagttaaataaagatagtggaaaattgtgaagtggagagtaatgaggggagtttaaagagaatgactcggtgtgtgt |
1540353 |
T |
|
| Q |
111 |
taactgtctttgtgatgtgtataaaataaaatgcatggaaaaaggattctcttgagatagagattagaccttac |
184 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1540354 |
taactgtctttgtgatgtgt-----ataaaatgcatggaaaaaggattctcttgagatagagattagaccttac |
1540422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University