View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1968_1D_low_6 (Length: 532)
Name: NF1968_1D_low_6
Description: NF1968_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1968_1D_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 448; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 21 - 511
Target Start/End: Original strand, 31230603 - 31231089
Alignment:
| Q |
21 |
caccttgaagtttaggaacgtagctgccaattgcaaggagtctttgatatttataccaagcaatcgacttttgtggaagtttaccatacaatcgcgaaag |
120 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31230603 |
caccttgaagtttaggaacgtagctgccaattgcaaggagtctttgatatttacaccaagcaatcgacttttgtggaagtttaccatacaatcgcgaaag |
31230702 |
T |
|
| Q |
121 |
gaacctcaaaccactttaggactgtcttcactccccaaattatcaatgaagctccctcaactaatagtgtatcatatgtatattgaagacgagataccat |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31230703 |
gaacctcaaaccactttaggactgtcttcactccccaaattatcaatgaagctctctcaactaatagtgtatcatatgtatattgaagacgagataccat |
31230802 |
T |
|
| Q |
221 |
atacctccattacccaactcaatctccccaaatctacctcgaacactcgtctccctcatcaaaccactcaagctcccaacaaatatccactttatcatta |
320 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |
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| T |
31230803 |
atacctccattacccaactcaatctccccaaatctacctcgaacactcgtctccctcatcaaaccactcaagctcccaacaaatatcaactt-----tta |
31230897 |
T |
|
| Q |
321 |
ggactctcattcacaagaacaccaagactaaacatgcctagaagccaacatctccacctggtaacaaccccaaatctactgaacatataatagtttagaa |
420 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31230898 |
ggactctcattcacaagaacaccaagactaaacatgcctagaagccaacatctccacctggtaacaaccccaaatctactgaacatataatagtttagaa |
31230997 |
T |
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| Q |
421 |
atgaccaagttactaaggatgt-atgaacaacttttggggttgttcattaatggagaattactctaaaagaactaaaagctacagctatact |
511 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
31230998 |
atgaccaagttactaaggatgtaatgaacaacttttggggttgttcattaatggagaattactctaaaagaaccaaaagctacagctatact |
31231089 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 443 - 477
Target Start/End: Complemental strand, 5411613 - 5411579
Alignment:
| Q |
443 |
atgaacaacttttggggttgttcattaatggagaa |
477 |
Q |
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| T |
5411613 |
atgaacaacttttggggttgttcattaatggagaa |
5411579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 442 - 489
Target Start/End: Original strand, 22620682 - 22620732
Alignment:
| Q |
442 |
tatgaacaacttttggggttgttcattaat---ggagaattactctaaaag |
489 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||| |||||| |
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| T |
22620682 |
tatgaacaacttttggggttgttcattaatagaggagaattactttaaaag |
22620732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 442 - 508
Target Start/End: Complemental strand, 33293729 - 33293661
Alignment:
| Q |
442 |
tatgaacaacttttggggttgttcattaat---ggagaattactctaaaagaactaaaagctacagctat |
508 |
Q |
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|||||||||||||| | ||||||||||||| ||||||||||||| |||| ||||||||||||| |||| |
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| T |
33293729 |
tatgaacaactttttgtgttgttcattaatggaggagaattactct-aaaggactaaaagctacaactat |
33293661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 442 - 501
Target Start/End: Complemental strand, 24899629 - 24899566
Alignment:
| Q |
442 |
tatgaacaacttttggggttgttcattaatggag---aattactctaaaag-aactaaaagcta |
501 |
Q |
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||||||||||||||| | |||||||||||||||| |||||||||||||| ||||||||||| |
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| T |
24899629 |
tatgaacaacttttgagattgttcattaatggaggaaaattactctaaaagtgactaaaagcta |
24899566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 439 - 475
Target Start/End: Original strand, 1236042 - 1236078
Alignment:
| Q |
439 |
atgtatgaacaacttttggggttgttcattaatggag |
475 |
Q |
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||||||| |||||||||||||||||||||||| |||| |
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| T |
1236042 |
atgtatgtacaacttttggggttgttcattaacggag |
1236078 |
T |
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