View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1968_1D_low_8 (Length: 461)

Name: NF1968_1D_low_8
Description: NF1968_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1968_1D_low_8
NF1968_1D_low_8
[»] chr1 (1 HSPs)
chr1 (1-461)||(38014281-38014744)


Alignment Details
Target: chr1 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 461
Target Start/End: Original strand, 38014281 - 38014744
Alignment:
Q  1 acaaaaaacagagaatatattcaaattgctagtcgacaacccaaatacaaggttgcttataagcataacacagtagtgctggtacacattaaaataattc 100  Q
    |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | |||| ||||||||||||||||| |||    
T  38014281 acaaaatacagagaatatattcaaattgctagtcgagaacccaaatacaaggttgcttataagcataacactgaagtgatggtacacattaaaatacttc 38014380  T
Q  101 cacaaagctatccaaattaccaacttgtcattnnnnnnncaaaa---gttttttacttcaaagatgtctgctgcctgccatctgggattgcaaataacac 197  Q
    |||||||||||||||||||||||| |||||||        ||||   | |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38014381 cacaaagctatccaaattaccaacctgtcattcaaaaacaaaaaaaagatttttacttcaaagatgtctgctgcctgccatctgggattgcaaataacac 38014480  T
Q  198 ggttggttccgaaggccagacgaagggtacatcacacctgaaatatccctttctctccagctgtaatacttctccacgcttaagattttgcatattggag 297  Q
    | |||||| |||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||    
T  38014481 gattggtttcgaaggccggacgaagggtacatcacacctaaaatatccctttctctccagctgcaatacttctccacgcttaagatttcgcatattggag 38014580  T
Q  298 tctccatatgctagagtctccttttttgtgcaagggttaagcacatcaacgaaattctctcctttctcaagctgcaaacaaagcaaataaaaacataaac 397  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  ||||| |||||||| |||||||||||||||||||||||| |||| |||||    
T  38014581 tctccatatgctagagtctccttttttgtgcaagggttaagcacatcagtgaaatcctctccttcctcaagctgcaaacaaagcaaatataaacttaaac 38014680  T
Q  398 agggaagcaagcaggtttgatgtatattaagtatgagtagatgaaatgaacactgaaccaaagt 461  Q
    |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||    
T  38014681 agggaagcaagcaggtttgacgtatattaagtatgagtagataaaatgaacactgaaccaaagt 38014744  T

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