View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1968_1D_low_9 (Length: 450)
Name: NF1968_1D_low_9
Description: NF1968_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1968_1D_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 22 - 439
Target Start/End: Original strand, 15429553 - 15429972
Alignment:
| Q |
22 |
actttggattactgggttcccctttcccttgggaactgg-gggttaccgtaaagnnnnnnn----ctccaagcgcccacaagtgcacatcatgtatatca |
116 |
Q |
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| T |
15429553 |
actttggattactgggtccccctttccgttgggaattggagggttaccgtaaataaaataaaaaactccaagcgcccacaagtgcacatcatgtatatca |
15429652 |
T |
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| Q |
117 |
ttgtaataaaaagttattgatctgcaatgacttgtgattatcaagtgtttagctagattttgtttttctcgcaatctaattaagatctcttatcattagc |
216 |
Q |
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| T |
15429653 |
atgtaataaaaagttattgatctgcaatgacttgtgattatcaagtgtttagctagattttgtttttctcgcaatctaattaagatctcttatcattagc |
15429752 |
T |
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| Q |
217 |
gatcggtgaattgtgaacagtgccaacaagaccacataaattacccacgttgtcattttttcataatatggatggttagcatcaaactgattctcataat |
316 |
Q |
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| T |
15429753 |
gatcggtgaattgtgaacagtgccaacaagaccacataaattacccacgttgtcattttctcataatatggatggttagcatcaaactgattctcataat |
15429852 |
T |
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| Q |
317 |
atggatgggatattgaaagaaatgaaaagtcgaaattcagagatggatatacaaggagaggaggccaagttgttnnnnnnnggagatggaggagttgtaa |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||| |
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| T |
15429853 |
atggatgggatattgaaagaaatgaaaagtcgaaattcagagatggatatacaaggagaggaggccaagttgttaaaaaaagaagat---ggagttgtaa |
15429949 |
T |
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| Q |
417 |
actcattcatataatttgttcat |
439 |
Q |
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| T |
15429950 |
actcattcatataatttgttcat |
15429972 |
T |
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