View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1968_2D_high_3 (Length: 206)
Name: NF1968_2D_high_3
Description: NF1968_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1968_2D_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 40757281 - 40757127
Alignment:
| Q |
1 |
catttaggaggtatttttctttcgcaaaagaaatatgtagaagaaattattgaacattgcaaggtatcacctacaccagttgacgtatacaaaggaaaaa |
100 |
Q |
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| T |
40757281 |
catttaggaggtatttttctttcgcaaaagaaatatgtagaagaaattattgaacattgcaaggtatcacctacaccagttgacgtatacaaaggaaaaa |
40757182 |
T |
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| Q |
101 |
cttagtggttcatcaggaaactcaaatcatgatccaacaaatacactagccttgc |
155 |
Q |
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| T |
40757181 |
cttagtggttcatcaggaaactcaaatcatgatccaacaaatacactagccttgc |
40757127 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 146 - 195
Target Start/End: Complemental strand, 40754718 - 40754669
Alignment:
| Q |
146 |
ctagccttgccgaagcattacaattcttgacatttacaacacctgatgtc |
195 |
Q |
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| T |
40754718 |
ctagccttgccgaagcattacaattcttgacatttacaataccggatgtc |
40754669 |
T |
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