View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1968_2D_low_1 (Length: 1139)
Name: NF1968_2D_low_1
Description: NF1968_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1968_2D_low_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 644; Significance: 0; HSPs: 15)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 644; E-Value: 0
Query Start/End: Original strand, 252 - 927
Target Start/End: Complemental strand, 1343939 - 1343264
Alignment:
| Q |
252 |
ccatcattcgatccattaataacagacaatagctcatcaactgaacgtccatccactacatcttcgtcttcaacttcaacattatttgttacccttttga |
351 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
1343939 |
ccatcattcgatccattaataaaagacaatagctcatcaactgaacgtccatccactacatcttcgtcttcaacttcaacattctttgttacccttttga |
1343840 |
T |
|
| Q |
352 |
gctctataagttgttctctcttctttgcatacaagctgttcaaaatcctgatacttgggtcgcaagttaggtttaacatcagctccaacttctcttcctc |
451 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1343839 |
gctctataagttgttctctcttctttgcatacaagctgttcaaaagcctgatacttgggtcgcaagttaggtttaacatcagctccaacttctcttcctc |
1343740 |
T |
|
| Q |
452 |
cataagatcatcaggcaaatgaaatatgtcgcgtatctcctcagatgattttccttcaattattctagttattgcatgacatgtgagatcatacaatgga |
551 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1343739 |
cataagatcatcaggcaaatgaaatatgtcgcgtatctcctcagatgattttccttcaattattctagttattgcatgacatgtgagatcatacaatgga |
1343640 |
T |
|
| Q |
552 |
tttaactgaaggtattttgcagcagacgtcaactcacataacctaggggcgtctatcctaacaaatttctcatcataagactttcgttctttgtttgagc |
651 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1343639 |
tttaactgaaggtattttgcagcagacgtcaactcacataacctaggggcgtctatcctaacgaatttctcatcataagactttcgttctttgtttgagc |
1343540 |
T |
|
| Q |
652 |
gtcctttcacgtgatgaaatcgacaataatcaagaattaaggttaagattgaaggagtgagtagttgaggaagacatattggagaagtcttggaagatcc |
751 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1343539 |
gtcctttcacgtgatgaaatcgacaataatcaagaattaaggttaagattgcaggagtgacttgttgaggaagacatattggagaagtcttggaagatcc |
1343440 |
T |
|
| Q |
752 |
ttgttgaggaagtaatattaactcttgacatataaaaggacaaaacattgcaatctcttgttccacttgttggattgaaccatcataggtttgaagccac |
851 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
1343439 |
ttgttgaggaagtaatattaactcttgacatataaaaggacaaaacattgcaatctcttgttccacctgttggattgaaccatcataggtttgaagccac |
1343340 |
T |
|
| Q |
852 |
acacaaggattcatcatctcagtttttgacatctcagaagaacaatatttgactcgatgaacaaaaatatttggga |
927 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1343339 |
acacaaggattcatcatctcagtttttgacatctcagaagaacaatatttgactcgatgaacaaaaatatttggga |
1343264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 644; E-Value: 0
Query Start/End: Original strand, 252 - 927
Target Start/End: Original strand, 1355648 - 1356323
Alignment:
| Q |
252 |
ccatcattcgatccattaataacagacaatagctcatcaactgaacgtccatccactacatcttcgtcttcaacttcaacattatttgttacccttttga |
351 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
1355648 |
ccatcattcgatccattaataaaagacaatagctcatcaactgaacgtccatccactacatcttcgtcttcaacttcaacattctttgttacccttttga |
1355747 |
T |
|
| Q |
352 |
gctctataagttgttctctcttctttgcatacaagctgttcaaaatcctgatacttgggtcgcaagttaggtttaacatcagctccaacttctcttcctc |
451 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1355748 |
gctctataagttgttctctcttctttgcatacaagctgttcaaaagcctgatacttgggtcgcaagttaggtttaacatcagctccaacttctcttcctc |
1355847 |
T |
|
| Q |
452 |
cataagatcatcaggcaaatgaaatatgtcgcgtatctcctcagatgattttccttcaattattctagttattgcatgacatgtgagatcatacaatgga |
551 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1355848 |
cataagatcatcaggcaaatgaaatatgtcgcgtatctcctcagatgattttccttcaattattctagttattgcatgacatgtgagatcatacaatgga |
1355947 |
T |
|
| Q |
552 |
tttaactgaaggtattttgcagcagacgtcaactcacataacctaggggcgtctatcctaacaaatttctcatcataagactttcgttctttgtttgagc |
651 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1355948 |
tttaactgaaggtattttgcagcagacgtcaactcacataacctaggggcgtctatcctaacgaatttctcatcataagactttcgttctttgtttgagc |
1356047 |
T |
|
| Q |
652 |
gtcctttcacgtgatgaaatcgacaataatcaagaattaaggttaagattgaaggagtgagtagttgaggaagacatattggagaagtcttggaagatcc |
751 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1356048 |
gtcctttcacgtgatgaaatcgacaataatcaagaattaaggttaagattgcaggagtgacttgttgaggaagacatattggagaagtcttggaagatcc |
1356147 |
T |
|
| Q |
752 |
ttgttgaggaagtaatattaactcttgacatataaaaggacaaaacattgcaatctcttgttccacttgttggattgaaccatcataggtttgaagccac |
851 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
1356148 |
ttgttgaggaagtaatattaactcttgacatataaaaggacaaaacattgcaatctcttgttccacatgttggattgaaccatcataggtttgaagccac |
1356247 |
T |
|
| Q |
852 |
acacaaggattcatcatctcagtttttgacatctcagaagaacaatatttgactcgatgaacaaaaatatttggga |
927 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1356248 |
acacaaggattcatcatctcagtttttgacatctcagaagaacaatatttgactcgatgaacaaaaatatttggga |
1356323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 3 - 161
Target Start/End: Complemental strand, 1344188 - 1344030
Alignment:
| Q |
3 |
tatgcaataatttccctgtgattgccagcatctctaagaatttcnnnnnnnctctcttcccaagaacaatttaatctgcgtgcaaattcttcgacttccc |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1344188 |
tatgcaataatttccctgtgattgccagcatctctaagaatttctttttttctctcttcccaagaacaatttaatctgcgtgcaaattcttcgacttccc |
1344089 |
T |
|
| Q |
103 |
tgtcaattctttcctgtaaggcctgatcaatctcatcatcaaactcaaccacaagatca |
161 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1344088 |
tgtcaattctttcctgtaaggcctgatcaatctcatcatcaaactcaaccacaagatca |
1344030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 3 - 161
Target Start/End: Original strand, 1355399 - 1355557
Alignment:
| Q |
3 |
tatgcaataatttccctgtgattgccagcatctctaagaatttcnnnnnnnctctcttcccaagaacaatttaatctgcgtgcaaattcttcgacttccc |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1355399 |
tatgcaataatttccctgtgattgccagcatctctaagaatttctttttttctctcttcccaagaacaatttaatctgcgtgcaaattcttcgacttccc |
1355498 |
T |
|
| Q |
103 |
tgtcaattctttcctgtaaggcctgatcaatctcatcatcaaactcaaccacaagatca |
161 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1355499 |
tgtcaattctttcctgtaaggcctgatcaatctcatcatcaaactcaaccacaagatca |
1355557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 93; E-Value: 1e-44
Query Start/End: Original strand, 442 - 876
Target Start/End: Complemental strand, 1350195 - 1349764
Alignment:
| Q |
442 |
tctcttcctccataagatcatcaggcaaatgaaatatgtcgcgtatctcctcagatgattttccttcaattattctagttattgcatgacatgtgagatc |
541 |
Q |
| |
|
|||||||||| ||||||||| |||| || ||| |||||||||||||||| | ||||||||||||||||| || | || |||||||||||||||||| |
|
|
| T |
1350195 |
tctcttcctctgtaagatcatgaggccaaataaacatgtcgcgtatctccttgggtgattttccttcaattaatcgtgctaatgcatgacatgtgagatc |
1350096 |
T |
|
| Q |
542 |
atacaatggatttaactgaaggtattttgcagcagacgtcaactcacataacctaggggcgtctatcctaacaaatttctcatcataagactttcgttct |
641 |
Q |
| |
|
|| ||||| ||||| |||||| |||||||||| | | ||| || | | | | ||||||||||||||||||| ||||||| | |||| ||| |
|
|
| T |
1350095 |
atttaatggctttaattgaaggctttttgcagcaaatgccaatgcaaagagtatgtcagggtctatcctaacaaatttcgcatcatacaattttctttcc |
1349996 |
T |
|
| Q |
642 |
ttgtttgagcgtcctttcacgtgatgaaatcgacaataatcaagaattaaggttaagattgaaggagtgagtagttgaggaagacatattggagaagtct |
741 |
Q |
| |
|
||||| ||| | |||| | |||||||||| ||||||||||||||||| || | || | ||||||| | | | ||||||||||||||||||||||| ||| |
|
|
| T |
1349995 |
ttgttggagtggccttgtatgtgatgaaattgacaataatcaagaattgagctcaacaatgaaggacttacttgttgaggaagacatattggagaactct |
1349896 |
T |
|
| Q |
742 |
tggaagatccttgttgaggaagtaatattaactcttgacatataaaaggacaaaacattgcaatctcttgttccacttgttggattgaaccatcataggt |
841 |
Q |
| |
|
|| ||||||| | |||||||| ||||| |||| ||||| ||| ||||||||||||||| || ||||||||||||||||||||| | || |
|
|
| T |
1349895 |
tgcaagatccagttcctttttgtaatatt---tcttgtaatatgaaaggggaaatcattgcaatctcttgatctacttgttggattgaaccatcacaagt |
1349799 |
T |
|
| Q |
842 |
ttgaagccacacacaaggattcatcatctcagttt |
876 |
Q |
| |
|
||||||||||||| ||| ||||||||||||||||| |
|
|
| T |
1349798 |
ttgaagccacacataagaattcatcatctcagttt |
1349764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 82; E-Value: 4e-38
Query Start/End: Original strand, 469 - 692
Target Start/End: Complemental strand, 1353525 - 1353313
Alignment:
| Q |
469 |
aatgaaatatgtcgcgtatctcctcagatgattttccttcaattattctagttattgcatgacatgtgagatcatacaatggatttaactgaaggtattt |
568 |
Q |
| |
|
|||||||| || || ||||| ||||||||||||||||||||||||||| || |||||||| |||||||||| |||||||||| |||||| |
|
|
| T |
1353525 |
aatgaaatgtgccgtgtatcacctcagatgattttccttcaattattcgagctattgcataacatgtgagaacatacaatggttttaac----------- |
1353437 |
T |
|
| Q |
569 |
tgcagcagacgtcaactcacataacctaggggcgtctatcctaacaaatttctcatcataagactttcgttcttt---gtttgagcgtcctttcacgtga |
665 |
Q |
| |
|
||||||||||| |||||||| | ||| || || |||||||||| |||||||| |||| |||||||||||||| |||||| || ||||| |||||| |
|
|
| T |
1353436 |
---agcagacgtcacctcacatagcttagtggtgtttatcctaacagatttctcaacatacgactttcgttctttgacgtttgaacggccttttacgtga |
1353340 |
T |
|
| Q |
666 |
tgaaatcgacaataatcaagaattaag |
692 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
1353339 |
tgaaatcgacaataatcaagaattaag |
1353313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 68; E-Value: 9e-30
Query Start/End: Original strand, 761 - 920
Target Start/End: Complemental strand, 1353291 - 1353150
Alignment:
| Q |
761 |
aagtaatattaactcttgacatataaaaggacaaaacattgcaatctcttgttccacttgttggattgaaccatcataggtttgaagccacacacaagga |
860 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||| |||||||||||| | |
|
|
| T |
1353291 |
aagtaatattaattcttgacatataaaagggcaaaatattgcaatctcttgttccacttgttgaattgaa----------------gccacacacaagaa |
1353208 |
T |
|
| Q |
861 |
ttcatcatctcagtttttgacatctcagaagaacaatatttgactcgatgaacaaaaata |
920 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||| |
|
|
| T |
1353207 |
ttcatcatctcagtttttgacatctgagaagaaca--atttgactcaatgaacaaaaata |
1353150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 63; E-Value: 8e-27
Query Start/End: Original strand, 958 - 1028
Target Start/End: Complemental strand, 1343233 - 1343163
Alignment:
| Q |
958 |
tagacctgtatttatagtgataaaaatcgtttgattttttaagaataagatttgcttcctaaaacaaagaa |
1028 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |
|
|
| T |
1343233 |
tagacctgtatttatagtgataaaaatcgtttgaatttttaagaataagatttgtttcctaaaacaaagaa |
1343163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 63; E-Value: 8e-27
Query Start/End: Original strand, 958 - 1028
Target Start/End: Original strand, 1356354 - 1356424
Alignment:
| Q |
958 |
tagacctgtatttatagtgataaaaatcgtttgattttttaagaataagatttgcttcctaaaacaaagaa |
1028 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |
|
|
| T |
1356354 |
tagacctgtatttatagtgataaaaatcgtttgaatttttaagaataagatttgtttcctaaaacaaagaa |
1356424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 63; E-Value: 8e-27
Query Start/End: Original strand, 642 - 870
Target Start/End: Complemental strand, 11366810 - 11366585
Alignment:
| Q |
642 |
ttgtttgagcgtcctttcacgtgatgaaatcgacaataatcaagaattaaggttaagattgaaggagtgagtagttgaggaagacatattggagaagtct |
741 |
Q |
| |
|
||||||||||| ||| || |||||||||||||| ||||||||||||||| | | |||| |||| ||| | ||||||||||||||| || | || ||| |
|
|
| T |
11366810 |
ttgtttgagcggcctagtacttgatgaaatcgacagtaatcaagaattaagctcagcattgcaggactgacttgttgaggaagacatactgcacaattct |
11366711 |
T |
|
| Q |
742 |
tggaagatccttgttgaggaagtaatattaactcttgacatataaaaggacaaaacattgcaatctcttgttccacttgttggattgaaccatcataggt |
841 |
Q |
| |
|
|||||| ||| | |||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||| | || |
|
|
| T |
11366710 |
tggaagttccattgcctttttgtaatatt---tcttgacatataaatggacaaaacatcgcaatctcttgttccacttgttggattgattcatcggaagt |
11366614 |
T |
|
| Q |
842 |
ttgaagccacacacaaggattcatcatct |
870 |
Q |
| |
|
||||||||||||| |||| |||||||||| |
|
|
| T |
11366613 |
ttgaagccacacataaggcttcatcatct |
11366585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 454 - 640
Target Start/End: Complemental strand, 11367100 - 11366914
Alignment:
| Q |
454 |
taagatcatcaggcaaatgaaatatgtcgcgtatctcctcagatgattttccttcaattattctagttattgcatgacatgtgagatcatacaatggatt |
553 |
Q |
| |
|
||||||||||||||||||||||||| || ||||||||||| | |||| ||||||||||||||| || | ||| ||| ||||||||| |||||| || |
|
|
| T |
11367100 |
taagatcatcaggcaaatgaaatatatcacgtatctcctccggtgatcttccttcaattattcgagcaagagcacgactggtgagatcaaccaatggctt |
11367001 |
T |
|
| Q |
554 |
taactgaaggtattttgcagcagacgtcaactcacataacctaggggcgtctatcctaacaaatttctcatcataagactttcgttc |
640 |
Q |
| |
|
|||||||||| | ||||||||| ||||||||||| | | | | |||||||||||| |||||||||||||||| ||| ||||| |
|
|
| T |
11367000 |
taactgaaggctgtctgcagcagatgtcaactcacagagcttctctgtgtctatcctaacgaatttctcatcataagccttccgttc |
11366914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 604 - 885
Target Start/End: Complemental strand, 1360691 - 1360413
Alignment:
| Q |
604 |
ctatcctaacaaatttctcatcataagactttcgttctttgtttgagcgtcctttcacgtgatgaaatcgacaataatcaagaattaaggttaagattga |
703 |
Q |
| |
|
||||||||||||||| ||||||||| | |||| ||| ||||||||| | |||| | |||||||||| |||||||||||||||||||| | || |||| |
|
|
| T |
1360691 |
ctatcctaacaaattcctcatcatacaattttctttccttgtttgagtggccttgtatgtgatgaaatagacaataatcaagaattaagttcaacattgc |
1360592 |
T |
|
| Q |
704 |
aggagtgagtagttgaggaagacatattggagaagtcttggaagatccttgttgaggaagtaatattaactcttgacatataaaaggacaaaacattgca |
803 |
Q |
| |
|
| || | | | || |||||||||||||| |||| |||||||||||||| | ||||| ||||||||||||||||| |||| ||||||| |
|
|
| T |
1360591 |
aagacttactttttcaggaagacatattgcagaactcttggaagatcctgtccctttttctgatatt---tcttgacatataaaagggcaaaccattgca |
1360495 |
T |
|
| Q |
804 |
atctcttgttccacttgttggattgaaccatcataggtttgaagccacacacaaggattcatcatctcagtttttgacatct |
885 |
Q |
| |
|
|||||| |||||| |||||||||| | ||| | |||| |||||| ||| |||| |||| ||||||||||| |||||||| |
|
|
| T |
1360494 |
atctctctatccactacttggattgaatcgtcacaagttttaagccatacataaggcttcaccatctcagtttctgacatct |
1360413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 155
Target Start/End: Complemental strand, 1361280 - 1361146
Alignment:
| Q |
15 |
tccctgtgattgccagcatctctaagaatttcnnnnnnnctctcttcccaagaacaatttaatctgcgtgcaaattcttcgacttccctgtcaattcttt |
114 |
Q |
| |
|
|||||||||||| || ||||||||||||||| |||||||| | || ||||||||||||||| ||||||||||| ||||| ||||| | |
|
|
| T |
1361280 |
tccctgtgattgtcacaatctctaagaatttcttttattctctcttcgcgagtacaatttaatctgcgcgcaaattcttccacttctttgtcagt----- |
1361186 |
T |
|
| Q |
115 |
cctgtaaggcctgatcaatctcatcatcaaactcaaccaca |
155 |
Q |
| |
|
| |||| | |||||||||||||||||||||||||||||| |
|
|
| T |
1361185 |
-cattaagtcatgatcaatctcatcatcaaactcaaccaca |
1361146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 160
Target Start/End: Complemental strand, 1350530 - 1350489
Alignment:
| Q |
119 |
taaggcctgatcaatctcatcatcaaactcaaccacaagatc |
160 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
1350530 |
taaggcctgatcaatcttatcatcaaactcaaccacatgatc |
1350489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 457 - 564
Target Start/End: Complemental strand, 1360838 - 1360731
Alignment:
| Q |
457 |
gatcatcaggcaaatgaaatatgtcgcgtatctcctcagatgattttccttcaattattctagttattgcatgacatgtgagatcatacaatggatttaa |
556 |
Q |
| |
|
|||||||| || ||||||||||||||| ||||||| | ||||||| ||| | | ||| || |||| ||||||||||||||||| |||||| || || |
|
|
| T |
1360838 |
gatcatcaagccaatgaaatatgtcgcaaatctcctttggtgattttatttccactgttcgagctatttcatgacatgtgagatcaatcaatggcttcaa |
1360739 |
T |
|
| Q |
557 |
ctgaaggt |
564 |
Q |
| |
|
|||||||| |
|
|
| T |
1360738 |
ctgaaggt |
1360731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 252; Significance: 1e-139; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-139
Query Start/End: Original strand, 358 - 753
Target Start/End: Complemental strand, 24618252 - 24617857
Alignment:
| Q |
358 |
taagttgttctctcttctttgcatacaagctgttcaaaatcctgatacttgggtcgcaagttaggtttaacatcagctccaacttctcttcctccataag |
457 |
Q |
| |
|
||||||||| |||||||||||||||||||| ||||| || |||||||||||| |||||||||| |||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
24618252 |
taagttgttttctcttctttgcatacaagcagttcataagcctgatacttggatcgcaagttatgtttaacatctgctccaatttctcttcctccataag |
24618153 |
T |
|
| Q |
458 |
atcatcaggcaaatgaaatatgtcgcgtatctcctcagatgattttccttcaattattctagttattgcatgacatgtgagatcatacaatggatttaac |
557 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| ||||| ||||||| ||||||| || |||||||||||||||||||||||||||||| | |||| |
|
|
| T |
24618152 |
atcatcaggcaaatgaaatatgtcgtgtatctcctccgatgaccttccttcgattattcgagctattgcatgacatgtgagatcatacaatggttctaac |
24618053 |
T |
|
| Q |
558 |
tgaaggtattttgcagcagacgtcaactcacataacctaggggcgtctatcctaacaaatttctcatcataagactttcgttctttgtttgagcgtcctt |
657 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||||||| ||||||||||| ||| ||||| |||||||| |||||| |||| ||||||||| | |||| |
|
|
| T |
24618052 |
tgaaggtattttgcgacagacatcaactcacataacctagtggcgtctatccaaacgaatttgtcatcatacgacttttgttccttgtttgagtggcctt |
24617953 |
T |
|
| Q |
658 |
tcacgtgatgaaatcgacaataatcaagaattaaggttaagattgaaggagtgagtagttgaggaagacatattggagaagtcttggaagatcctt |
753 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||| |||| |||||||| | ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24617952 |
gtacgtgatcaaatcgacaataatcaagaattaaggttaacattgcaggagtgacttgttgaggaagacatattggagaagtcttggaagatcctt |
24617857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 100; E-Value: 7e-49
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 24618578 - 24618418
Alignment:
| Q |
1 |
actatgcaataatttccctgtgattgccagcatctctaagaatttcnnnnnnnctctcttcccaagaacaatttaatctgcgtgcaaattcttcgacttc |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||||||| ||| ||||||||||||||||||||||| ||||| |
|
|
| T |
24618578 |
actatgcaataatttccttgtgattgccagcacctctaagaatttctattttcctctcttcccaagcacagtttaatctgcgtgcaaattcttccacttc |
24618479 |
T |
|
| Q |
101 |
cctgtcaattctttcctgtaaggcctgatcaatctcatcatcaaactcaaccacaagatca |
161 |
Q |
| |
|
|||||||||| ||||||| ||| |||||||||||||||||| ||||||||||||| ||||| |
|
|
| T |
24618478 |
cctgtcaattttttcctgcaagacctgatcaatctcatcattaaactcaaccacaggatca |
24618418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 252 - 316
Target Start/End: Complemental strand, 24618318 - 24618254
Alignment:
| Q |
252 |
ccatcattcgatccattaataacagacaatagctcatcaactgaacgtccatccactacatcttc |
316 |
Q |
| |
|
|||||||| ||| ||||||||| |||||| ||||| |||||||||||| |||| ||||||||||| |
|
|
| T |
24618318 |
ccatcatttgattcattaataaaagacaaaagctcgtcaactgaacgttcatctactacatcttc |
24618254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 8e-24; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 8e-24
Query Start/End: Original strand, 774 - 847
Target Start/End: Complemental strand, 13589914 - 13589841
Alignment:
| Q |
774 |
tcttgacatataaaaggacaaaacattgcaatctcttgttccacttgttggattgaaccatcataggtttgaag |
847 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |
|
|
| T |
13589914 |
tcttgacatatgaaagggcaaaacattgcaatctcttgttccacttgttggattgaaccatcacaagtttgaag |
13589841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 456 - 517
Target Start/End: Original strand, 29388944 - 29389005
Alignment:
| Q |
456 |
agatcatcaggcaaatgaaatatgtcgcgtatctcctcagatgattttccttcaattattct |
517 |
Q |
| |
|
|||||||| |||||||||||||| || ||||||||||||| |||||||||||||||||||| |
|
|
| T |
29388944 |
agatcatccggcaaatgaaatatctcccgtatctcctcaggagattttccttcaattattct |
29389005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 774 - 835
Target Start/End: Original strand, 29389381 - 29389442
Alignment:
| Q |
774 |
tcttgacatataaaaggacaaaacattgcaatctcttgttccacttgttggattgaaccatc |
835 |
Q |
| |
|
|||||||| |||| ||| |||||||||||||| ||||||||||| ||||| ||||||||||| |
|
|
| T |
29389381 |
tcttgacaaataagagggcaaaacattgcaatttcttgttccacctgttgaattgaaccatc |
29389442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 8e-24; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 8e-24
Query Start/End: Original strand, 368 - 859
Target Start/End: Original strand, 43364827 - 43365312
Alignment:
| Q |
368 |
tctcttctttgcatacaagctgttcaaaatcctgatacttgggtcgcaagttaggtttaacatcagctccaacttctcttcctccataagatcatcaggc |
467 |
Q |
| |
|
||||||||| |||||||||| |||||||| |||||| |||||||| ||| | |||||||| ||||||| ||||||||||| |||||||||||||| |
|
|
| T |
43364827 |
tctcttcttggcatacaagcggttcaaaagcctgatgcttgggtcatcagtgatgtttaacaagggctccaatttctcttcctcggtaagatcatcaggc |
43364926 |
T |
|
| Q |
468 |
aaatgaaatatgtcgcgtatctcctcagatgattttccttcaattattctagttattgcatgacatgtgagatcatacaatggatttaactgaaggtatt |
567 |
Q |
| |
|
| | |||||||| |||||| ||||| | || || ||||||||||| || || |||| ||| |||||||||| |||||| || || || | |
|
|
| T |
43364927 |
acacgaaatatgctgcgtatttcctctggcgaccttttttcaattattcgagctagtgcacgacttgtgagatcaatcaatggccggaattgtagactgt |
43365026 |
T |
|
| Q |
568 |
ttgcagcagacgtcaactcacataacctaggggcgtctatcctaacaaatttctcatcataagactttcgttctttgtttgagcgtcctttcacgtgatg |
667 |
Q |
| |
|
||||||| ||| ||||||||| | | || | ||||||| |||| || | |||||||| ||||||||||| ||||||||||| ||| | ||||| |
|
|
| T |
43365027 |
gtgcagcacacgccaactcacagagcatatttgtgtctatcttaacgaaactatcatcataggactttcgttccttgtttgagcggcctggtgcttgatg |
43365126 |
T |
|
| Q |
668 |
aaatcgacaataatcaagaattaaggttaagattgaaggagtgagtagttgaggaagacatattggagaagtcttggaagatccttgttgaggaagtaat |
767 |
Q |
| |
|
|||||||||||||| |||||| ||| | | |||| || | ||| ||||||||||||||| || | || ||||||||||||| | | | |
|
|
| T |
43365127 |
aaatcgacaataattaagaatcaagctccacattggagaactgacctgttgaggaagacatactgcacaattcttggaagatccc--------atgcctt |
43365218 |
T |
|
| Q |
768 |
att--aactcttgacatataaaaggacaaaacattgcaatctcttgttccacttgttggattgaaccatcataggtttgaagccacacacaagg |
859 |
Q |
| |
|
|| || |||| ||||||||| || |||||||||||||| ||||| |||||||||||| ||||||||||| | ||||||||||||||| |||| |
|
|
| T |
43365219 |
tttgcaattcttcacatataaatgggcaaaacattgcaatatcttgctccacttgttgggttgaaccatcagaagtttgaagccacacataagg |
43365312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 782 - 890
Target Start/End: Original strand, 43369386 - 43369494
Alignment:
| Q |
782 |
tataaaaggacaaaacattgcaatctcttgttccacttgttggattgaaccatcataggtttgaagccacacacaaggattcatcatctcagtttttgac |
881 |
Q |
| |
|
|||||| || |||||||||||||| ||||||||||||||||| |||||||||||| | ||||||||||||||| ||| |||||||||| ||||| ||| |
|
|
| T |
43369386 |
tataaatgggcaaaacattgcaatatcttgttccacttgttgaattgaaccatcagaagtttgaagccacacataagacttcatcatcttagtttccgac |
43369485 |
T |
|
| Q |
882 |
atctcagaa |
890 |
Q |
| |
|
|||| |||| |
|
|
| T |
43369486 |
atctgagaa |
43369494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 66 - 144
Target Start/End: Original strand, 43364462 - 43364540
Alignment:
| Q |
66 |
gaacaatttaatctgcgtgcaaattcttcgacttccctgtcaattctttcctgtaaggcctgatcaatctcatcatcaa |
144 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||||| ||||||||| | ||||||||| |||||||||||||||||| |
|
|
| T |
43364462 |
gaacaatttaatctgcgggcaaattcttccacttccctatcaattcttgcttgtaaggccggatcaatctcatcatcaa |
43364540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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