View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1968_2D_low_2 (Length: 300)
Name: NF1968_2D_low_2
Description: NF1968_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1968_2D_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 281
Target Start/End: Original strand, 43664029 - 43664308
Alignment:
| Q |
1 |
ctagagcaaagggtatgctgtaagtgatctgaacaaataataacacaagattagtgttagtttaacttgcattgcataaagtttcttgactttttgcttt |
100 |
Q |
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| T |
43664029 |
ctagagcaaagggtatgctgtaagtgatctgaacaaataataacacaagattagtgttagtttaacttgcattgcataaagtttcttgacttt------- |
43664121 |
T |
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| Q |
101 |
gtaaattttaagcacttttagtaactattctctctttaggaaagaaatggataataattgaagaa----------acagattttggacttcaaaagaaag |
190 |
Q |
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| T |
43664122 |
---aattttaagcacttttagtaactattctctctttaggaaagaaatgaataataattgaagaacattaaagaaacagattt-ggacttcaaaacaaag |
43664217 |
T |
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| Q |
191 |
agcatcacgagaaagctaaactgctgtcaggaaattgcaactcaaaagtgaatgaattaaattcaatcactgtaaataaaatagaacctca |
281 |
Q |
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| T |
43664218 |
aacatcacgagaaagctaaactgctgtcaggaaattgcaactcaaaagtgaatgaattaaattcaatcactgtaaataaaatagaacctca |
43664308 |
T |
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Target: chr2 (Bit Score: 158; Significance: 4e-84; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 24559903 - 24559738
Alignment:
| Q |
1 |
ctagagcaaagggtatgctgtaagtgatctgaacaaataataacacaagattagtgttagtttaacttgcattgcataaagtttcttgactttttgcttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
24559903 |
ctagagcaaagggtatgctgtaagtgatctgaacaaataataacacaagattagtgttagtttaacttgcattgtataaagtttcttgactttttgcttt |
24559804 |
T |
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| Q |
101 |
gtaaattttaagcacttttagtaactattctctctttaggaaagaaatggataataattgaagaaa |
166 |
Q |
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| T |
24559803 |
gtaaattttaagcacttttagtaactattctctctttaggaaagaaatgaataataattgaagaaa |
24559738 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 72 - 137
Target Start/End: Original strand, 19138512 - 19138577
Alignment:
| Q |
72 |
ttgcataaagtttcttgactttttgctttgtaaattttaagcacttttagtaactattctctcttt |
137 |
Q |
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| T |
19138512 |
ttgcataaagttactttactttttgctttgtaaattttaagcacttttagtaactattctctcttt |
19138577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 211 - 264
Target Start/End: Complemental strand, 51815461 - 51815408
Alignment:
| Q |
211 |
ctgctgtcaggaaattgcaactcaaaagtgaatgaattaaattcaatcactgta |
264 |
Q |
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| T |
51815461 |
ctgctgtcaggaaattgcaactcaaaagtgaatgaaataaattcaatcattgta |
51815408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 112 - 166
Target Start/End: Complemental strand, 51815564 - 51815510
Alignment:
| Q |
112 |
gcacttttagtaactattctctctttaggaaagaaatggataataattgaagaaa |
166 |
Q |
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||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||| |
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| T |
51815564 |
gcacttttattaactcttctctctttaggaaagaaatggataatagttgaagaaa |
51815510 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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