View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1968_2D_low_5 (Length: 219)
Name: NF1968_2D_low_5
Description: NF1968_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1968_2D_low_5 |
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| [»] chr7 (3 HSPs) |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 174; Significance: 9e-94; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 14 - 219
Target Start/End: Complemental strand, 32718687 - 32718482
Alignment:
| Q |
14 |
gttttctatcagtgcaatagttataaatggtgtatttttggcgcacccatcttagtctacgccattgagcagcatcaagatcacgaaattcaggttgatc |
113 |
Q |
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| T |
32718687 |
gtttcctatcggtgcaatagttataaatggtgtatttttggcgcacccatcttagtctacgccattgagcagcatcaagatcacgaaattcaggttgatc |
32718588 |
T |
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| Q |
114 |
ccaccatcttttgccttgtgttgcacagaatttagcttgaacagatgattcacaaccatcaatgtggaaacttttgtaacctgctatgaatggtgctttt |
213 |
Q |
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| T |
32718587 |
ccaccatcttttaccttgtgttgcacaaaactttgcattaacagatgattcacaaccatcaatgtggaaacttttgtaacctgctatgaatggtgctttt |
32718488 |
T |
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| Q |
214 |
gaccaa |
219 |
Q |
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|||||| |
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| T |
32718487 |
gaccaa |
32718482 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 14 - 219
Target Start/End: Complemental strand, 32715309 - 32715104
Alignment:
| Q |
14 |
gttttctatcagtgcaatagttataaatggtgtatttttggcgcacccatcttagtctacgccattgagcagcatcaagatcacgaaattcaggttgatc |
113 |
Q |
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|||||||||||||||||||||| ||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32715309 |
gttttctatcagtgcaatagttgtaaattgtgtatttttgacgcacccatcttagcctacgccattgagcagcatcaagatcacgaaattcaggttgatc |
32715210 |
T |
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| Q |
114 |
ccaccatcttttgccttgtgttgcacagaatttagcttgaacagatgattcacaaccatcaatgtggaaacttttgtaacctgctatgaatggtgctttt |
213 |
Q |
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| T |
32715209 |
ccaccatcttttaccttgtgttgcacaaaactttgcattaacagatgattcacaaccatcaatgtggaagcctttgtagcctgctatgaatggtgctttt |
32715110 |
T |
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| Q |
214 |
gaccaa |
219 |
Q |
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| T |
32715109 |
gaccaa |
32715104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 75 - 219
Target Start/End: Complemental strand, 32710026 - 32709882
Alignment:
| Q |
75 |
ccattgagcagcatcaagatcacgaaattcaggttgatcccaccatcttttgccttgtgttgcacagaatttagcttgaacagatgattcacaaccatca |
174 |
Q |
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| T |
32710026 |
ccattgagcagcatcaaggtcacgaaattcaggtcgattccaccattttctaccttgttttgcacagtactttgcattaactgaggtttcacaaccatca |
32709927 |
T |
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| Q |
175 |
atgtggaaacttttgtaacctgctatgaatggtgcttttgaccaa |
219 |
Q |
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| T |
32709926 |
atgtgaaaacttttgtaacctgctatgaatggtgctttggaccaa |
32709882 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 87; Significance: 7e-42; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 21 - 219
Target Start/End: Original strand, 10379581 - 10379779
Alignment:
| Q |
21 |
atcagtgcaatagttataaatggtgtatttttggcgcacccatcttagtctacgccattgagcagcatcaagatcacgaaattcaggttgatcccaccat |
120 |
Q |
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|||| |||||||||||||||| ||||||||||| |||||||||||||| || ||||||||||| ||||||| ||| ||||||||||||||||||||||| |
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| T |
10379581 |
atcattgcaatagttataaattgtgtatttttgacgcacccatcttagcctttgccattgagcaacatcaaggtcatgaaattcaggttgatcccaccat |
10379680 |
T |
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| Q |
121 |
cttttgccttgtgttgcacagaatttagcttgaacagatgattcacaaccatcaatgtggaaacttttgtaacctgctatgaatggtgcttttgaccaa |
219 |
Q |
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| T |
10379681 |
ctttttccttgtgtgtcacaaaattttgcattcacagaagcttcacacccatcaatatggaaccctttgtaagaggctatgaagggtgctttggaccaa |
10379779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 28 - 219
Target Start/End: Complemental strand, 10411642 - 10411451
Alignment:
| Q |
28 |
caatagttataaatggtgtatttttggcgcacccatcttagtctacgccattgagcagcatcaagatcacgaaattcaggttgatcccaccatcttttgc |
127 |
Q |
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| T |
10411642 |
caatagttataaattgtgtatttttgacgcacccatcttagtctttgccattgagcaacatcaagatcatgaaactcaggttgatcccaccatctttttc |
10411543 |
T |
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| Q |
128 |
cttgtgttgcacagaatttagcttgaacagatgattcacaaccatcaatgtggaaacttttgtaacctgctatgaatggtgcttttgaccaa |
219 |
Q |
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| T |
10411542 |
cttgtgtgtcacaaaattttgcattcacagaagcttcacaaccatcgatatgaaaccctttgtatgaggctatgaagggtgctttggaccaa |
10411451 |
T |
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