View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1968_low_1 (Length: 508)
Name: NF1968_low_1
Description: NF1968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1968_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 443; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 1 - 490
Target Start/End: Original strand, 1539937 - 1540422
Alignment:
| Q |
1 |
agcagcaggaagagtggcagcttttgtaacattcaaaacaacaccaagattagcactgtttttgagagaatcacaaagacaagtaggagatgttttcaga |
100 |
Q |
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| T |
1539937 |
agcagcaggaagggtggcagcttttgtaacattcaaaacaacaccaagattagcactgtttttgagagaatcacaaagacaagtaggagatgttttcaga |
1540036 |
T |
|
| Q |
101 |
acagttttcaagccagaacagcatgcccctgatggtttggttatggtactgtcatttgaaacaaatgacaaacaatcagccatgatgacaacaatggttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1540037 |
acagttttcaagccagaacagcatgcccctgatggtttggttatggtactgtcatttgaaacaaatgacaaacaatcagccatgatgacaacaatggttg |
1540136 |
T |
|
| Q |
201 |
aacaatcagcagagggtgatggagcatcacgtgctgatgaagcactaggaaaatcaacggcccagatgacaaaaatgcagagaatgaatgaaaactttga |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
1540137 |
aacaatcagcagagggtgatggagcatcacgtgctgatgaagcactaggaaaatcaacggcccagatgacaaaaatggagagaatgaatgaaaactttga |
1540236 |
T |
|
| Q |
301 |
ggccatgatgaa-gaatgagagattgttgtgatgtgtagttagttaaataaagatagtggagaattgtgaagtggagagtaatgaggggagtttaaagag |
399 |
Q |
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| T |
1540237 |
ggccatggagaaggaatgagagattgttgtgatgtgtagttagttaaataaagatagtggaaaattgtgaagtggagagtaatgaggggagtttaaagag |
1540336 |
T |
|
| Q |
400 |
aatgactcggtgtgtgttaactgtctttgtgatgtgtataaaataaaatgcatggaaaaaggattctcttgagatagagattagaccttac |
490 |
Q |
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| T |
1540337 |
aatgactcggtgtgtgttaactgtctttgtgatgtgt-----ataaaatgcatggaaaaaggattctcttgagatagagattagaccttac |
1540422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 308
Target Start/End: Complemental strand, 1642129 - 1642084
Alignment:
| Q |
263 |
cagatgacaaaaatgcagagaatgaatgaaaactttgaggccatga |
308 |
Q |
| |
|
|||||||||| ||||| |||||||| |||||||||||| ||||||| |
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| T |
1642129 |
cagatgacaataatgctgagaatgagtgaaaactttgatgccatga |
1642084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 2 - 123
Target Start/End: Original strand, 29804009 - 29804130
Alignment:
| Q |
2 |
gcagcaggaagagtggcagcttttgtaacattcaaaacaacaccaagattagcactgtttttgagagaatcacaaagacaagtaggagatgttttcagaa |
101 |
Q |
| |
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||||||||||||| | |||||| ||||||||||| |||||||||| | |||||| | |||| || ||||| ||||||| ||||| ||||| || | |
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| T |
29804009 |
gcagcaggaagagaagtagctttggtaacattcaagacaacaccaaactgagcactactcttgaaagcctcacagagacaagaaggagcagttttgagca |
29804108 |
T |
|
| Q |
102 |
cagttttcaagccagaacagca |
123 |
Q |
| |
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||| |||||| ||||||||||| |
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| T |
29804109 |
cagatttcaaaccagaacagca |
29804130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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