View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1968_low_3 (Length: 475)
Name: NF1968_low_3
Description: NF1968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1968_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 276; Significance: 1e-154; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 16 - 302
Target Start/End: Complemental strand, 417435 - 417148
Alignment:
| Q |
16 |
atagaagtagcaggtggagtaagtgtgacataaaaaa-ggatcaagtgttgtgttggtatcaagaggaacaattgacctgctgctgcaacaatatggatc |
114 |
Q |
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| T |
417435 |
atagaagtagcaggtggagtaagtgtgacataaaaaaaggatcaagtgttgtgttggtatcaagaggaacaattgacctgctgctgcaacaatatggatc |
417336 |
T |
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| Q |
115 |
acagcagcaagttacaagaattagtgtcatttagttataatggtgttatcccaatttctgttagtgatgtcatggttctgcttactaattgttattgttg |
214 |
Q |
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| T |
417335 |
acagcagcaagttacaagaattagtgtcatttagttataatggtgttatcccaatttctgttagtgatgtcatggttctgcttactaattattattgttg |
417236 |
T |
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| Q |
215 |
cattgctgtttcctgtgcagtgcagagactatataatatctgtgctctgtttttacgtcccgagtttcgcctagagcctttagtgtac |
302 |
Q |
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| T |
417235 |
cattgctgtttcctgtgcagtgcagagactatataatatctgtgctctgtttttacgtcccgagtttcgcctagagcctttagtgtac |
417148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 329 - 457
Target Start/End: Complemental strand, 417111 - 416983
Alignment:
| Q |
329 |
aatacaattttaaaaaatatcacttgattacaggatagaaaatgcagaataaaaaacaagtggtcacctccatagtttttgtatgacctctcccttggca |
428 |
Q |
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| T |
417111 |
aatacaattttaaaaaatatcacttgattacaggatagaaaatgcagaataaaaaacaagtggtcacctccatagtttttgtatgacctctcccttggca |
417012 |
T |
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| Q |
429 |
atgtgttggtctagcaaggcaggcacatc |
457 |
Q |
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| T |
417011 |
atgtgttggtctagcaaggcaggcacatc |
416983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 386 - 457
Target Start/End: Complemental strand, 405972 - 405901
Alignment:
| Q |
386 |
aagtggtcacctccatagtttttgtatgacctctcccttggcaatgtgttggtctagcaaggcaggcacatc |
457 |
Q |
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| T |
405972 |
aagtggttacctccatagtttttgtatgacctctcccttggcaatatgttgatccagcaaggcaggcacatc |
405901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 421 - 457
Target Start/End: Original strand, 22513682 - 22513718
Alignment:
| Q |
421 |
ccttggcaatgtgttggtctagcaaggcaggcacatc |
457 |
Q |
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| T |
22513682 |
ccttggcaatgtgttggtctagcaaggcaagcacatc |
22513718 |
T |
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