View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1968_low_4 (Length: 434)
Name: NF1968_low_4
Description: NF1968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1968_low_4 |
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| [»] chr7 (2 HSPs) |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 19 - 434
Target Start/End: Complemental strand, 33995300 - 33994882
Alignment:
| Q |
19 |
attcgttgatgaaaaaatatggttgatagaagagactccgacaaaggtggtaagttagattccccaacacatattagttgtttgtgaaagatgataaata |
118 |
Q |
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| T |
33995300 |
attcgttgatgaaaaaatatggttgatagaagagaccccgacaaaggtggtaagttagattccccaacacatattagttgtttgtgaaagacgataaata |
33995201 |
T |
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| Q |
119 |
cttcgcaccaatgacacgattaccaaaatatgtagttggaaggagagattccactaaatatggtcggtaagatcccccgtaacagactagtcatccgtag |
218 |
Q |
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| T |
33995200 |
cttcgcaccaatgacacgattaccaaaatatgtagttggaaggagagattccactaaatatggtcggtgagatcccccgtaacagactagtcattcgtgg |
33995101 |
T |
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| Q |
219 |
atgtttcgcactaatacgatggtaacnnnnnnnnnnnnnnntaatgtagcgaagtaaggagtatactagtattactaatatttcactcttca------tg |
312 |
Q |
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| T |
33995100 |
atgtttcgcactaatacgatggtaa---aaaaaaatataaataatgtagcgaaataaggagtatactagtattactaatatttcactcttcacatttgtg |
33995004 |
T |
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| Q |
313 |
caaagtaacnnnnnnnncttgtaaatgataaatgaattaccttaacctgcaaatggagaatattaccaagcaccactccaataggaataccaatcaggta |
412 |
Q |
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| T |
33995003 |
caaagtaacttttttttcttgtaaatgataaatgaattaccttaacttgcaaatggagaatattaccaagcaccactccaataggaataccaatcaggta |
33994904 |
T |
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| Q |
413 |
atagcagcctatgtttacatat |
434 |
Q |
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| T |
33994903 |
atagcagcctatgtttacatat |
33994882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 332 - 434
Target Start/End: Complemental strand, 33986552 - 33986450
Alignment:
| Q |
332 |
tgtaaatgataaatgaattaccttaacctgcaaatggagaatattaccaagcaccactccaataggaataccaatcaggtaatagcagcctatgtttaca |
431 |
Q |
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| T |
33986552 |
tgtaaatgtgaaattaattaccttaacttgtaaatggagaagattaccaagcaaaactccaataggaatcccaattaggtaataggagcctatgtttaca |
33986453 |
T |
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| Q |
432 |
tat |
434 |
Q |
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||| |
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| T |
33986452 |
tat |
33986450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 377 - 434
Target Start/End: Original strand, 9214697 - 9214754
Alignment:
| Q |
377 |
accaagcaccactccaataggaataccaatcaggtaatagcagcctatgtttacatat |
434 |
Q |
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| T |
9214697 |
accaatcactactccaacaggaataccaattaggtaataacaacctatgtttacatat |
9214754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 377 - 434
Target Start/End: Original strand, 9234463 - 9234520
Alignment:
| Q |
377 |
accaagcaccactccaataggaataccaatcaggtaatagcagcctatgtttacatat |
434 |
Q |
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| T |
9234463 |
accaatcactactccaacaggaataccaattaggtaataacaacctatgtttacatat |
9234520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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