View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19690_high_3 (Length: 541)
Name: NF19690_high_3
Description: NF19690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19690_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 478; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 1 - 526
Target Start/End: Original strand, 32084659 - 32085184
Alignment:
| Q |
1 |
tatttcaagggaggcaaatttgtggaaaatgtcgtcaattttggaggctgtaagagtttgggtttcaccaagggtggattgattggtagtgagtttgcta |
100 |
Q |
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|||||||||||| || |||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32084659 |
tatttcaagggacgctaatttgtggagaatgtcgtcaattttggaggccgtaagagtttgggtttcaccaagggtggattgattggtagtgagtttgcta |
32084758 |
T |
|
| Q |
101 |
acggcttcttccattttattagcggtggattttgaacgagtagtttccagattagctcgatgaaaataccgaagtattaggaactgagtaaatttgctat |
200 |
Q |
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| T |
32084759 |
atggcttcttccattttattagcggtggattttgaacgagtagtttccagattagctcgatgaaaataccaaagtattaggaactgagtaaatttgctat |
32084858 |
T |
|
| Q |
201 |
agctagagggctaatataacctcctaagaaggaaatagataatgagattttaagtcttgcttgatttgaaaatgctggaatcacatcaatatattaggaa |
300 |
Q |
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| T |
32084859 |
agctagagggctaatataacctcctaagaaggaaatagataatgagattttaagtcttgcttgatttgaaaatgctggaatcacatcaatatattaggaa |
32084958 |
T |
|
| Q |
301 |
atgcaaaggtgtggctttcttatagatgatttgacataatccctaaagtactttggagtcatgatctttcttttaggcatctcatttggcctctcttgtg |
400 |
Q |
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| T |
32084959 |
atgcaaaggtgtggctttcttatagatgatttgacataatccctaaagtactttggagacatgatctttcttttaggcatctcatgtggcctctcttgtg |
32085058 |
T |
|
| Q |
401 |
tctgaccttactctttgcttccagtccatgtcttatcatatttgcttcccatcaacatcatattgttttgtcgatgtgtttgacaggggaagcaagagaa |
500 |
Q |
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| T |
32085059 |
tctggccttactctttgcttccagtctatgtcttatcatatttgctttccatcaacatcatattgttttgtcgatgtgtttgacaggggaatcaagagaa |
32085158 |
T |
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| Q |
501 |
ttaattctttcaaaaactgtgatttg |
526 |
Q |
| |
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| T |
32085159 |
ttaattctttcaaaaactgtgatttg |
32085184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 5 - 290
Target Start/End: Original strand, 32086128 - 32086411
Alignment:
| Q |
5 |
tcaagggaggcaaatttgtggaaaatgtcgtcaattttggaggctgtaagagtttgggtttcaccaagggtggattgattggtagtgagtttgctaacgg |
104 |
Q |
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||||||||||| || ||||||| |||||| |||||| |||||| | ||||||||| ||||| ||||||| |||||| ||| |||||||||||| || |
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| T |
32086128 |
tcaagggaggctaacttgtggagaatgtcatcaattagggaggccgggagagtttggatttcaacaagggtaaattgatcagtaatgagtttgctaatgg |
32086227 |
T |
|
| Q |
105 |
cttcttccattttattagcggtggattttgaacgagtagtttccagattagctcgatgaaaataccgaagtattaggaactgagtaaatttgctatagct |
204 |
Q |
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||||||||||||||| || |||| ||| |||| ||||||| ||||||| ||||||||| ||| |||| |||||||||| |||||||||| |||| | |
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| T |
32086228 |
cttcttccattttatcggctgtggctttcgaacatgtagtttttggattagcccgatgaaaacaccaaagtgttaggaactgggtaaatttgcaatagtt |
32086327 |
T |
|
| Q |
205 |
agagggctaatataacctcctaagaaggaaatagataatgagattttaagtcttgcttgatttgaaaatgctggaatcacatcaat |
290 |
Q |
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||| ||| |||||||||||||||||| ||||||||| |||| | |||| |||||||| ||||||||||||| || ||||| |
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| T |
32086328 |
caaggacta--gcaacctcctaagaaggaaaaagataatgaaatttagattctttcttgatttcaaaatgctggaattacttcaat |
32086411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 436 - 518
Target Start/End: Original strand, 32086848 - 32086930
Alignment:
| Q |
436 |
tcatatttgcttcccatcaacatcatattgttttgtcgatgtgtttgacaggggaagcaagagaattaattctttcaaaaact |
518 |
Q |
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|||||||| ||||| |||||||| |||||||||||||||||||||||| |||||||| | || ||| ||||||| ||||||| |
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| T |
32086848 |
tcatattttcttccaatcaacattatattgttttgtcgatgtgtttgagaggggaagtaggataatcaattcttgtaaaaact |
32086930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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