View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19690_high_5 (Length: 488)
Name: NF19690_high_5
Description: NF19690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19690_high_5 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 394; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 6 - 488
Target Start/End: Complemental strand, 39129070 - 39128584
Alignment:
| Q |
6 |
atggacatcatcaccatcaccaacagcacagtactttgacttatcagaacccttaaaaatcatttttcaacagtagccttcacaccaaagaaaagcctgt |
105 |
Q |
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| T |
39129070 |
atggccatcatcaccaccaccaacagcacagtactttgacttatcagaacccttaaaaatcatttttcaacagtagccttcacaccaaagaaaagcctgt |
39128971 |
T |
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| Q |
106 |
gnnnnnnnnnnnnnnnncaataaataagcttccttcaagaaacttctacaatacacttccaaaagcaaacacaaacaataaacaccaagaaaatagacat |
205 |
Q |
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| T |
39128970 |
gaaaaaaaaccaaaaaacaataaataagcttccttcaagaaacttctacaatacacttccaaaagcaaacacaaacgataaacaccaagaaaatagacat |
39128871 |
T |
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| Q |
206 |
ttaaaaatctaatcaggaaaaacaaagttaagtgaaaacagaatccaccgctctaacaacatatatacattgccaacagataaaagaaaataagaataaa |
305 |
Q |
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| T |
39128870 |
ttaaaaatctaatcaggaaaaacaaaggtaagtgaaaacagaatccaccgctctaacaacatatatacattgccaacagataaaagaaaataagaataaa |
39128771 |
T |
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| Q |
306 |
cataaacacctagt----agtaacaatgttgataagtttatttggtggtttcaaattgaacatagttgaaacaagcaaaacccttaaaatcaatttctca |
401 |
Q |
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| T |
39128770 |
cataaacacctggtagtaagtaacaatgttgataagtttatttggtggtttcaaattgaacatagttgaaacaagcaaaacccttaaaatcaatttctca |
39128671 |
T |
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| Q |
402 |
actatggcattcactcggaccacacaaaaatgaaaccttgttaaggaaatttcaaacaaaatgaaacataaacacagtgatactatt |
488 |
Q |
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| T |
39128670 |
actatggcattcactcagaccacacaaaaatgaaaccttgttaaggaaatttcaaacaaaatcaaacataaacacagtgatactatt |
39128584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 39496028 - 39496094
Alignment:
| Q |
18 |
accatcaccaacagcacagtactttgacttatcagaacccttaaaaatcatttttcaacagtagcct |
84 |
Q |
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| T |
39496028 |
accaccaccaacaccacagaactttgacttatcagaacccttaaaagccatttttcaacggtagcct |
39496094 |
T |
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