View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19690_high_7 (Length: 416)
Name: NF19690_high_7
Description: NF19690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19690_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 277; Significance: 1e-155; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 17 - 329
Target Start/End: Original strand, 29158196 - 29158507
Alignment:
| Q |
17 |
ggattgatcttgtgcaagggcagaaatcacagcatgctgttgttgtggatttggtattagcttcaccattggaaagcagttgagtgatgaaggatgcccg |
116 |
Q |
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| T |
29158196 |
ggattgatcttgtgcaagggcagaaatcacagcatgctgttgttgtggatttggtattagcttcaccattggagagcagttgagtgatgaaggatgcccg |
29158295 |
T |
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| Q |
117 |
atcgaaacgagcatcaaccatggttgaagtgaagctcaagaggaaaaccaacaaagctaacttcatcatcattgccttcttgttcatcatcagcaacatt |
216 |
Q |
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| T |
29158296 |
atcgaaacgagcatcaaccatggttgaagtgaagctcaagaggaaaaccaacaaagctaacttcatcatcattgccttcttgttcatcatcaacaccatt |
29158395 |
T |
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| Q |
217 |
atcaccatctttttctcactttctctcactcttactattatgtatgtatgtgtaccttttcaagttagctatatatgggtctatttatacacaacgctga |
316 |
Q |
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| T |
29158396 |
atcactatctttttctcactttctctcactcttactattatgtatgtatgtgtaccttttc-agctagctatatgtgggtctatttatatacaacgctga |
29158494 |
T |
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| Q |
317 |
tgtttagacacca |
329 |
Q |
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| T |
29158495 |
tgtttagacacca |
29158507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 19 - 237
Target Start/End: Original strand, 29206798 - 29207022
Alignment:
| Q |
19 |
attgatcttgtgcaagggcagaaatcacagcatgctgttgttgtggattt------ggtattagcttcaccattggaaagcagttgagtgatgaaggatg |
112 |
Q |
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| T |
29206798 |
attgattttgtgcaagggcagctattacagcatgctgttgttgtggattttacttcgtaagtagcttcaccattggagagcagttgagtgatgaaggatg |
29206897 |
T |
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| Q |
113 |
cccgatcgaaacgagcatcaaccatggttgaagtgaagctcaagaggaaaaccaacaaagctaacttcatcatcattgccttcttgttcatcatcagcaa |
212 |
Q |
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| T |
29206898 |
atccgtcgaaacgagcatcaacaacagttgaagtgaagcccaaaaggaaaaccaacaaagctaacttcatcaccattgccttcttgttcatcatcaaatc |
29206997 |
T |
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| Q |
213 |
cattatcaccatctttttctcactt |
237 |
Q |
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| T |
29206998 |
cattatcactatctctttctcactt |
29207022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 79 - 201
Target Start/End: Original strand, 29153631 - 29153753
Alignment:
| Q |
79 |
tcaccattggaaagcagttgagtgatgaaggatgcccgatcgaaacgagcatcaaccatggttgaagtgaagctcaagaggaaaaccaacaaagctaact |
178 |
Q |
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| T |
29153631 |
tcaccatttgagatcacttgagttatgaaggatgttgaatcgaaacgagcatcaacaacagttgaagtgaagcccaaaaggaaaaccagcaaagctaact |
29153730 |
T |
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| Q |
179 |
tcatcatcattgccttcttgttc |
201 |
Q |
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| T |
29153731 |
tcatcaccattgccttcttgttc |
29153753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 126 - 185
Target Start/End: Original strand, 29145111 - 29145170
Alignment:
| Q |
126 |
agcatcaaccatggttgaagtgaagctcaagaggaaaaccaacaaagctaacttcatcat |
185 |
Q |
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| T |
29145111 |
agcatcaaccatggttgatgtgaagctcaagaggaaaaccaacaaagctaatttcatcat |
29145170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 21 - 186
Target Start/End: Original strand, 29161865 - 29162036
Alignment:
| Q |
21 |
tgatcttgtgcaagggcagaaatcacagcatgctgttgttgtggatttggtatt------agcttcaccattggaaagcagttgagtgatgaaggatgcc |
114 |
Q |
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| T |
29161865 |
tgatcttgtgcattggcagctattacagcatcctgttgttgtggatttgacatcgtaagcagcttcaccatttgagattacttgagttatgaaggatgtt |
29161964 |
T |
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| Q |
115 |
cgatcgaaacgagcatcaaccatggttgaagtgaagctcaagaggaaaaccaacaaagctaacttcatcatc |
186 |
Q |
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| T |
29161965 |
ggatcgaaacgagcatcaacaacagttgaagtgaagcccaaaagaaaaaccaataaagctaacttcatcatc |
29162036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 29145065 - 29145110
Alignment:
| Q |
17 |
ggattgatcttgtgcaagggcagaaatcacagcatgctgttgttgt |
62 |
Q |
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| T |
29145065 |
ggattgattttgtgcaagggcaggaatcacagcatgctgttgttgt |
29145110 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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