View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19690_high_9 (Length: 336)
Name: NF19690_high_9
Description: NF19690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19690_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 12 - 322
Target Start/End: Complemental strand, 19145064 - 19144753
Alignment:
| Q |
12 |
atgaagcctgcattagatagatcatagaatacaagaacaaacccttttc-ccccctcacaatttccaactatagaaccaaacccctccctatatatatcc |
110 |
Q |
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| T |
19145064 |
atgaagcctgcattagatagatcatagaatacaagaacaaacccttttttccccctcaaaattttcaactatagaaccaaacccctccctatatatatcc |
19144965 |
T |
|
| Q |
111 |
tcacacataaaattcttcaaatctcatccaacaacatcttcaaagttcttcaacattataatcatactnnnnnnncatgtcttcctctaccttgaaagtt |
210 |
Q |
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| T |
19144964 |
tcacacataacattcttcaaatctcatccaacaacatcttcaaagttcttcaacattataatcatactaaaaaaacatgtcttcctctaccttgaaagtt |
19144865 |
T |
|
| Q |
211 |
gttgtctcactcattatttccatgtttacccttgtgacagtcactagggctggtgaccccgacatactaaccgacttcataagcccgataaccggcccag |
310 |
Q |
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||| |||||||||| ||||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
19144864 |
gttctctcactcatcatttccacttttacccttgtgacaatcactagggctggtgaccctgacatactaaccgacttcataagcccgataaccggcccag |
19144765 |
T |
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| Q |
311 |
tcgatgcaaact |
322 |
Q |
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|||||||||||| |
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| T |
19144764 |
tcgatgcaaact |
19144753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 30 - 322
Target Start/End: Original strand, 19147934 - 19148240
Alignment:
| Q |
30 |
agatcatagaatacaagaacaaacccttttcccccctcacaatttccaactatagaaccaaacccctccctatatatatcctcacacataaaattcttca |
129 |
Q |
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||||||||||||||||||||||| | ||| ||| ||||||||| ||| || ||||||||||| ||||||||||||||||||| ||||| | |||||| |
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| T |
19147934 |
agatcatagaatacaagaacaaaatcctttttcccttcacaatttataaccattgaaccaaaccc-tccctatatatatcctcacccataacactcttca |
19148032 |
T |
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| Q |
130 |
aatctcatccaacaacatcttcaaagttcttcaacattataat---------------catactnnnnnnn-catgtcttcctctaccttgaaagttgtt |
213 |
Q |
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|||||||||||||| ||||||||||||||||||| |||||||| |||||| |||||||||||||| ||||||||||||| |
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| T |
19148033 |
aatctcatccaaca-catcttcaaagttcttcaatattataattataattattataatcatactaaaaaaaacatgtcttcctctagcttgaaagttgtt |
19148131 |
T |
|
| Q |
214 |
gtctcactcattatttccatgtttacccttgtgacagtcactagggctggtgaccccgacatactaaccgacttcataagcccgataaccggcccagtcg |
313 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
19148132 |
ctctcactcattatttccacgtttacccttgtgacagtcactagggctggtgaccccgacatactaaccgacttcataagcccgataactggcccagtcg |
19148231 |
T |
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| Q |
314 |
atgcaaact |
322 |
Q |
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||||||||| |
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| T |
19148232 |
atgcaaact |
19148240 |
T |
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