View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19690_low_1 (Length: 949)
Name: NF19690_low_1
Description: NF19690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19690_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 432; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 19 - 504
Target Start/End: Original strand, 34042525 - 34042998
Alignment:
| Q |
19 |
ttatgcctcatatgagacaaaataatatttttacataaataaatagcactgatgaggagaagaaaagtggtaattgaagaagaacagtatacaaaagaag |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34042525 |
ttatgcctcatatgagacaaaataatatttttacataaataaatagcactgatgaggagaagaaaagtggtaattgaagaagaacagtatacaaaagaag |
34042624 |
T |
|
| Q |
119 |
atcatggttacatgctgcatagattttagcaacaaagatttggaaataagcttctttgttttcaagcctactgtagtaattgttgaccatcttattcatg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
34042625 |
atcatggttacatgctgcatagattttagcaacaaagatttggaaataagcttctttgttttcaagcctactgtagtaattgttgaccgtcttattcatg |
34042724 |
T |
|
| Q |
219 |
aaatcaaacaattttcctcacgtgctgagaatcttggttgtgtacaaagctcaatacttaagagcatccatggaaatatggtatatatttccatctttta |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34042725 |
aaatcaaacaattttcctcacgtgctgagaatcttggttgtgtacaaagctcaatacttaagagcatccatggaaatatggtatatatttccatctttta |
34042824 |
T |
|
| Q |
319 |
tttctcttgtttttcttatattttggttcatagctagtattaaaagaaattgtactgatactatactgatactagatcatatggtttggagcatggcaaa |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |
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| T |
34042825 |
tttctcttgtttttcttatattttggttcatagctagtattaaaagaaattg-----------tactcatactagatcatatggtttggagcatggcaaa |
34042913 |
T |
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| Q |
419 |
aacggtcttatgatgaaaaggataaattgacagctgaccttgtaagtaatgacctctgactaattgacatttatctgttatatgat |
504 |
Q |
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| T |
34042914 |
aacggtcttatgatgaaaaggataaattgacagctgaccttgtaagt-atgacctctgactaattgacatttatctgttatatgat |
34042998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 541 - 942
Target Start/End: Original strand, 34043023 - 34043424
Alignment:
| Q |
541 |
ctcttacagctatcaattctaatacatgtaacaagaatggctgtcttggttgaacactatttcctcaatgcatatgctggagaatcaagagatggttctt |
640 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34043023 |
ctcttacagctatcaattctaatacatgtaacaagaatggctgtcttggttgaacactatttcctcaatgcatatgctggagaatcaagagatggttctt |
34043122 |
T |
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| Q |
641 |
caactataaattttagtacaggtgatataatctccatgaactcaatactcacaaatatcaaagaccttaatgatttgtgctatgcaatccttgcaatatt |
740 |
Q |
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| T |
34043123 |
caactataaattttagtacaggtgatataatctccatgaactcaatactcacaaatatcaaagaccttaatgatttgtgctatgcaatccttgcaatatt |
34043222 |
T |
|
| Q |
741 |
taggtcacgtttttcccaaatacaaggtaaaaattcaggcctttgcttgaaaggccaaaagttacctaatgttgtatgcattcatgtgtggaagtcacta |
840 |
Q |
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| T |
34043223 |
taggtcacgtttttcccaaatacaaggtaaaaattcaggcctttgcttgaaaggccaaaagttacctaatgttgtatgcattcatgtgtggaagtcacta |
34043322 |
T |
|
| Q |
841 |
cagttttgttactcatggattctaaatccagattatagaaattggatgattccatatcttgaacgtttctccattaacatgatgaagtatgatattcttc |
940 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
34043323 |
cagttttgttactcatggattctaaatccagattatagaaattggatgattccatatcttgaacgtttctccattaacatgatgaagtatgatatttttc |
34043422 |
T |
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| Q |
941 |
ga |
942 |
Q |
| |
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|| |
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|
| T |
34043423 |
ga |
34043424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 3e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 202 - 253
Target Start/End: Complemental strand, 52523552 - 52523501
Alignment:
| Q |
202 |
tgaccatcttattcatgaaatcaaacaattttcctcacgtgctgagaatctt |
253 |
Q |
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| T |
52523552 |
tgaccatcttattcatgaaatcaaacaattttcctcacgtgctgagaatctt |
52523501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 142 - 301
Target Start/End: Original strand, 5898750 - 5898909
Alignment:
| Q |
142 |
ttttagcaacaaagatttggaaataagcttctttgttttcaagcctactgtagtaattgttgaccatcttattcatgaaatcaaacaattttcctcacgt |
241 |
Q |
| |
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||||| |||||| ||||||||||||| ||||||||||||||||| || | || ||| | || ||||| |||||| |||||||||| |||| | | |
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| T |
5898750 |
ttttaacaacaagaatttggaaataagtttctttgttttcaagccaacaattgtgattatagatgatcttgttcatggtctcaaacaattctccttaact |
5898849 |
T |
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| Q |
242 |
gctgagaatcttggttgtgtacaaagctcaatacttaagagcatccatggaaatatggta |
301 |
Q |
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|||| | ||||||||||| |||||||| ||| ||| ||||||||||||||||||||| |
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| T |
5898850 |
actgaaacccttggttgtgttcaaagctctatatttagaagcatccatggaaatatggta |
5898909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 774 - 860
Target Start/End: Original strand, 5899930 - 5900016
Alignment:
| Q |
774 |
ttcaggcctttgcttgaaaggccaaaagttacctaatgttgtatgcattcatgtgtggaagtcactacagttttgttactcatggat |
860 |
Q |
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|||||| |||||||||||||| |||| ||| | ||||| ||||||||||||||||| || || || ||||||||||||||||| |
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| T |
5899930 |
ttcaggtctttgcttgaaaggacaaagcagaccaatagttgtgtgcattcatgtgtggaaatctcttcatttttgttactcatggat |
5900016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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