View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19690_low_13 (Length: 290)

Name: NF19690_low_13
Description: NF19690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19690_low_13
NF19690_low_13
[»] chr7 (4 HSPs)
chr7 (33-252)||(6889795-6890014)
chr7 (25-252)||(6844786-6845010)
chr7 (19-214)||(6849382-6849571)
chr7 (137-212)||(30597469-30597544)
[»] chr3 (8 HSPs)
chr3 (147-193)||(481774-481820)
chr3 (151-186)||(476839-476874)
chr3 (132-186)||(13490193-13490247)
chr3 (147-196)||(1205136-1205185)
chr3 (147-196)||(1303917-1303966)
chr3 (43-88)||(13485324-13485369)
chr3 (64-100)||(4150279-4150315)
chr3 (64-100)||(4166048-4166084)
[»] chr6 (9 HSPs)
chr6 (148-193)||(7114797-7114842)
chr6 (148-193)||(7119869-7119914)
chr6 (148-193)||(7123273-7123318)
chr6 (148-193)||(7117321-7117366)
chr6 (148-193)||(7129696-7129741)
chr6 (148-192)||(7140000-7140044)
chr6 (60-101)||(7114895-7114936)
chr6 (60-101)||(7119967-7120008)
chr6 (60-101)||(7123371-7123412)
[»] scaffold0525 (1 HSPs)
scaffold0525 (148-193)||(1945-1990)
[»] chr5 (2 HSPs)
chr5 (135-184)||(25070007-25070056)
chr5 (135-184)||(25127982-25128031)
[»] chr4 (1 HSPs)
chr4 (141-185)||(52187624-52187668)


Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 33 - 252
Target Start/End: Original strand, 6889795 - 6890014
Alignment:
Q  33 ttcctgctctgaaactacatgggatagagagcaatctctcttctgtcaaacatgtaaagattgatgtaagcatagcgtcagggtctattgatgcagatat 132  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||    
T  6889795 ttcctgctctgaaactacatgggatagagagcaatctctcttctgtcaaacatgtaaagattgatgtaagcatagcgtcaaggtctattgatgtagatat 6889894  T
Q  133 ttctttggttcttctcaactggctggttgaacttgctaatatcaaatcattgacaatcaatcataatgctctagaggtacttccgtcgaagtttgatttg 232  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  6889895 ttctttggttcttctcaactggctggttgaacttgctaatatcaaatcattgacaatcaatcataatgctctagaggtactttcgtcgaagtttgatttg 6889994  T
Q  233 aggaagtattagttgattca 252  Q
    ||||||||||||||||||||    
T  6889995 aggaagtattagttgattca 6890014  T

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Target: chr7; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 25 - 252
Target Start/End: Original strand, 6844786 - 6845010
Alignment:
Q  25 gggggatattcctgctctgaaactacatgggatagagagcaatctctcttctgtcaaacatgtaaagattgatgtaagcatagcgtcagggtctattgat 124  Q
    |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||   | ||||  ||||| |    
T  6844786 ggggaatattcctgctctgaaactacatgggatagagagaaatctctcttctgtcaaacatgtaaagattgatgtaagcata---ttagggagtattgtt 6844882  T
Q  125 gcagatatttctttggttcttctcaactggctggttgaacttgctaatatcaaatcattgacaatcaatcataatgctctagaggtacttccgtcgaagt 224  Q
    |  |||| |||||||| ||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||| || | ||||    
T  6844883 gtggatacttctttggctcttctcaactggctggttgaacttgccaatatcaaatcattgactatcaaccataatgctctagaggtactttcggccaagt 6844982  T
Q  225 ttgatttgaggaagtattagttgattca 252  Q
    ||||||||||| |||||||||| |||||    
T  6844983 ttgatttgagggagtattagttaattca 6845010  T

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Target: chr7; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 19 - 214
Target Start/End: Original strand, 6849382 - 6849571
Alignment:
Q  19 ttgttcgggggatattcctgctctgaaactacatgggatagagagcaatctctcttctgtcaaacatgtaaagattgatgtaagcatagcgtcagggtct 118  Q
    |||| ||||||||||||||  ||| ||||||| ||||| |||||||||||||||||| |||||||||||||| |||||| |||  || |      |||||    
T  6849382 ttgtacgggggatattcctaatctaaaactacgtgggagagagagcaatctctcttccgtcaaacatgtaaatattgatttaaatatgg------ggtct 6849475  T
Q  119 attgatgcagatatttctttggttcttctcaactggctggttgaacttgctaatatcaaatcattgacaatcaatcataatgctctagaggtactt 214  Q
    |||||||| |||| | |||| ||||||||||||||||||| ||||||| ||||| |||||||||||||||||||| ||| | ||||||||||||||    
T  6849476 attgatgcggatactccttttgttcttctcaactggctggctgaacttactaatgtcaaatcattgacaatcaatgatacttctctagaggtactt 6849571  T

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Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 137 - 212
Target Start/End: Complemental strand, 30597544 - 30597469
Alignment:
Q  137 ttggttcttctcaactggctggttgaacttgctaatatcaaatcattgacaatcaatcataatgctctagaggtac 212  Q
    |||||||||||||||||| | | ||| |||||||||||||||||||||||| ||||||||| ||||||| ||||||    
T  30597544 ttggttcttctcaactggttagctgagcttgctaatatcaaatcattgacactcaatcatactgctctaaaggtac 30597469  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 147 - 193
Target Start/End: Original strand, 481774 - 481820
Alignment:
Q  147 tcaactggctggttgaacttgctaatatcaaatcattgacaatcaat 193  Q
    ||||||||||||||||||||||||||||| |||||||||| ||||||    
T  481774 tcaactggctggttgaacttgctaatatcgaatcattgaccatcaat 481820  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 151 - 186
Target Start/End: Original strand, 476839 - 476874
Alignment:
Q  151 ctggctggttgaacttgctaatatcaaatcattgac 186  Q
    ||||||||||||||||||||||||| ||||||||||    
T  476839 ctggctggttgaacttgctaatatcgaatcattgac 476874  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 132 - 186
Target Start/End: Complemental strand, 13490247 - 13490193
Alignment:
Q  132 tttctttggttcttctcaactggctggttgaacttgctaatatcaaatcattgac 186  Q
    |||| |||||||| ||||||||||| ||||| |||||||||||  ||||||||||    
T  13490247 tttcattggttctgctcaactggctagttgagcttgctaatattgaatcattgac 13490193  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 196
Target Start/End: Original strand, 1205136 - 1205185
Alignment:
Q  147 tcaactggctggttgaacttgctaatatcaaatcattgacaatcaatcat 196  Q
    |||||| ||||||||| |||||||||||| |||||||||| |||| ||||    
T  1205136 tcaacttgctggttgagcttgctaatatcgaatcattgaccatcactcat 1205185  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 196
Target Start/End: Complemental strand, 1303966 - 1303917
Alignment:
Q  147 tcaactggctggttgaacttgctaatatcaaatcattgacaatcaatcat 196  Q
    |||||| ||||||||| |||||||||||| |||||||||| |||| ||||    
T  1303966 tcaacttgctggttgagcttgctaatatcgaatcattgaccatcactcat 1303917  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 88
Target Start/End: Complemental strand, 13485369 - 13485324
Alignment:
Q  43 gaaactacatgggatagagagcaatctctcttctgtcaaacatgta 88  Q
    |||||| ||||||||  ||||||||||||||||| |||||||||||    
T  13485369 gaaactccatgggatcaagagcaatctctcttctatcaaacatgta 13485324  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 100
Target Start/End: Original strand, 4150279 - 4150315
Alignment:
Q  64 caatctctcttctgtcaaacatgtaaagattgatgta 100  Q
    ||||||||||||| ||||||||||||| |||||||||    
T  4150279 caatctctcttctatcaaacatgtaaaaattgatgta 4150315  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 100
Target Start/End: Original strand, 4166048 - 4166084
Alignment:
Q  64 caatctctcttctgtcaaacatgtaaagattgatgta 100  Q
    ||||||||||||| ||||||||||||| |||||||||    
T  4166048 caatctctcttctatcaaacatgtaaaaattgatgta 4166084  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 148 - 193
Target Start/End: Complemental strand, 7114842 - 7114797
Alignment:
Q  148 caactggctggttgaacttgctaatatcaaatcattgacaatcaat 193  Q
    ||||||||||||||| |||||||||||| |||||||||||||||||    
T  7114842 caactggctggttgagcttgctaatatcgaatcattgacaatcaat 7114797  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 148 - 193
Target Start/End: Complemental strand, 7119914 - 7119869
Alignment:
Q  148 caactggctggttgaacttgctaatatcaaatcattgacaatcaat 193  Q
    ||||||||||||||| |||||||||||| |||||||||||||||||    
T  7119914 caactggctggttgagcttgctaatatcgaatcattgacaatcaat 7119869  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 148 - 193
Target Start/End: Complemental strand, 7123318 - 7123273
Alignment:
Q  148 caactggctggttgaacttgctaatatcaaatcattgacaatcaat 193  Q
    ||||||||||||||| |||||||||||| |||||||||||||||||    
T  7123318 caactggctggttgagcttgctaatatcgaatcattgacaatcaat 7123273  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 148 - 193
Target Start/End: Complemental strand, 7117366 - 7117321
Alignment:
Q  148 caactggctggttgaacttgctaatatcaaatcattgacaatcaat 193  Q
    ||||||||||||||| |||||| ||||| |||||||||||||||||    
T  7117366 caactggctggttgagcttgcttatatcgaatcattgacaatcaat 7117321  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 148 - 193
Target Start/End: Complemental strand, 7129741 - 7129696
Alignment:
Q  148 caactggctggttgaacttgctaatatcaaatcattgacaatcaat 193  Q
    ||||||||||||||| |||||| ||||| |||||||||||||||||    
T  7129741 caactggctggttgagcttgcttatatcgaatcattgacaatcaat 7129696  T

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Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 192
Target Start/End: Complemental strand, 7140044 - 7140000
Alignment:
Q  148 caactggctggttgaacttgctaatatcaaatcattgacaatcaa 192  Q
    ||||||| ||||||| |||||||||||| ||||||||||||||||    
T  7140044 caactggttggttgagcttgctaatatcgaatcattgacaatcaa 7140000  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 101
Target Start/End: Complemental strand, 7114936 - 7114895
Alignment:
Q  60 agagcaatctctcttctgtcaaacatgtaaagattgatgtaa 101  Q
    |||| ||||||||||| |||||||||||||| ||||||||||    
T  7114936 agagtaatctctcttcagtcaaacatgtaaacattgatgtaa 7114895  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 101
Target Start/End: Complemental strand, 7120008 - 7119967
Alignment:
Q  60 agagcaatctctcttctgtcaaacatgtaaagattgatgtaa 101  Q
    |||| ||||||||||| |||||||||||||| ||||||||||    
T  7120008 agagtaatctctcttcagtcaaacatgtaaacattgatgtaa 7119967  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 101
Target Start/End: Complemental strand, 7123412 - 7123371
Alignment:
Q  60 agagcaatctctcttctgtcaaacatgtaaagattgatgtaa 101  Q
    |||| ||||||||||| |||||||||||||| ||||||||||    
T  7123412 agagtaatctctcttcagtcaaacatgtaaacattgatgtaa 7123371  T

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Target: scaffold0525 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0525
Description:

Target: scaffold0525; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 148 - 193
Target Start/End: Complemental strand, 1990 - 1945
Alignment:
Q  148 caactggctggttgaacttgctaatatcaaatcattgacaatcaat 193  Q
    ||||||| ||||||| |||||||||||| |||||||||||||||||    
T  1990 caactggttggttgagcttgctaatatcgaatcattgacaatcaat 1945  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 135 - 184
Target Start/End: Original strand, 25070007 - 25070056
Alignment:
Q  135 ctttggttcttctcaactggctggttgaacttgctaatatcaaatcattg 184  Q
    ||||| |||| |||||||||||||||||  ||||||||||||||||||||    
T  25070007 ctttgcttctactcaactggctggttgagattgctaatatcaaatcattg 25070056  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 135 - 184
Target Start/End: Original strand, 25127982 - 25128031
Alignment:
Q  135 ctttggttcttctcaactggctggttgaacttgctaatatcaaatcattg 184  Q
    ||||| |||| |||||||||||||||||  ||||||||||||||||||||    
T  25127982 ctttgcttctactcaactggctggttgagattgctaatatcaaatcattg 25128031  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 185
Target Start/End: Original strand, 52187624 - 52187668
Alignment:
Q  141 ttcttctcaactggctggttgaacttgctaatatcaaatcattga 185  Q
    |||| ||||| ||||||||||| |||||||||||| |||||||||    
T  52187624 ttctactcaattggctggttgagcttgctaatatcgaatcattga 52187668  T

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