View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19690_low_4 (Length: 501)

Name: NF19690_low_4
Description: NF19690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19690_low_4
NF19690_low_4
[»] chr7 (10 HSPs)
chr7 (180-441)||(1971096-1971365)
chr7 (161-395)||(37362401-37362622)
chr7 (11-83)||(1971415-1971487)
chr7 (287-375)||(7841360-7841448)
chr7 (186-239)||(7841460-7841512)
chr7 (446-483)||(39262777-39262814)
chr7 (445-483)||(48844138-48844176)
chr7 (78-118)||(1971360-1971400)
chr7 (373-445)||(24759474-24759546)
chr7 (448-479)||(2440075-2440106)
[»] chr1 (12 HSPs)
chr1 (265-445)||(40981488-40981666)
chr1 (265-467)||(50290411-50290611)
chr1 (342-445)||(29836239-29836342)
chr1 (165-264)||(31770870-31770966)
chr1 (296-445)||(27843642-27843791)
chr1 (287-446)||(6919549-6919708)
chr1 (185-263)||(7607901-7607977)
chr1 (352-445)||(38240176-38240269)
chr1 (293-386)||(14184747-14184840)
chr1 (448-485)||(51382509-51382546)
chr1 (447-481)||(38509035-38509069)
chr1 (448-481)||(39183239-39183272)
[»] chr4 (23 HSPs)
chr4 (265-445)||(14210313-14210491)
chr4 (265-445)||(14211282-14211460)
chr4 (265-445)||(14212233-14212411)
chr4 (265-445)||(14214170-14214348)
chr4 (265-445)||(14215139-14215317)
chr4 (265-445)||(14218010-14218188)
chr4 (265-445)||(14219949-14220127)
chr4 (265-445)||(14220900-14221078)
chr4 (265-445)||(14209362-14209540)
chr4 (288-445)||(14213223-14213380)
chr4 (265-445)||(14216108-14216286)
chr4 (265-445)||(14217059-14217237)
chr4 (288-445)||(14219001-14219158)
chr4 (265-445)||(14221869-14222047)
chr4 (265-445)||(14222838-14223016)
chr4 (165-376)||(41810243-41810445)
chr4 (373-445)||(30176040-30176112)
chr4 (444-485)||(16030585-16030626)
chr4 (373-441)||(11214843-11214910)
chr4 (373-441)||(11225354-11225421)
chr4 (447-485)||(2304303-2304341)
chr4 (310-391)||(1068910-1068991)
chr4 (445-485)||(33315929-33315969)
[»] chr3 (15 HSPs)
chr3 (186-440)||(53689246-53689487)
chr3 (288-411)||(12812821-12812944)
chr3 (185-395)||(52311477-52311676)
chr3 (287-446)||(45458409-45458567)
chr3 (373-447)||(43399448-43399522)
chr3 (342-445)||(29129130-29129233)
chr3 (265-361)||(14459162-14459256)
chr3 (165-252)||(52130959-52131043)
chr3 (293-386)||(52130851-52130943)
chr3 (268-363)||(25489560-25489653)
chr3 (373-445)||(52126885-52126957)
chr3 (447-479)||(50719204-50719236)
chr3 (447-479)||(50793612-50793644)
chr3 (287-440)||(53556759-53556912)
chr3 (448-481)||(29157525-29157558)
[»] chr2 (11 HSPs)
chr2 (265-445)||(31409598-31409776)
chr2 (373-447)||(22145644-22145718)
chr2 (448-485)||(6673920-6673957)
chr2 (373-446)||(26449092-26449165)
chr2 (373-446)||(38403354-38403427)
chr2 (448-481)||(16970265-16970298)
chr2 (448-481)||(28003478-28003511)
chr2 (446-483)||(32286934-32286971)
chr2 (444-481)||(38943997-38944034)
chr2 (448-481)||(38993391-38993424)
chr2 (451-479)||(27534974-27535002)
[»] chr8 (14 HSPs)
chr8 (11-131)||(19962380-19962499)
chr8 (292-445)||(29729269-29729421)
chr8 (373-447)||(8022722-8022796)
chr8 (446-485)||(45239359-45239398)
chr8 (342-391)||(16395613-16395662)
chr8 (448-485)||(38684863-38684900)
chr8 (447-479)||(9885367-9885399)
chr8 (447-483)||(32721323-32721359)
chr8 (448-479)||(4970052-4970083)
chr8 (447-485)||(43418199-43418237)
chr8 (296-448)||(765505-765657)
chr8 (446-479)||(23830912-23830945)
chr8 (448-485)||(34310341-34310378)
chr8 (373-446)||(38681136-38681209)
[»] chr6 (8 HSPs)
chr6 (373-445)||(18645950-18646022)
chr6 (423-485)||(20910732-20910790)
chr6 (423-485)||(20925180-20925238)
chr6 (373-442)||(8840653-8840722)
chr6 (405-445)||(34008621-34008661)
chr6 (448-485)||(31661143-31661180)
chr6 (447-483)||(7018679-7018715)
chr6 (447-479)||(26846230-26846262)
[»] scaffold0192 (1 HSPs)
scaffold0192 (446-485)||(19119-19158)
[»] scaffold0790 (1 HSPs)
scaffold0790 (447-485)||(3964-4002)
[»] scaffold0188 (1 HSPs)
scaffold0188 (448-481)||(28312-28345)
[»] chr5 (6 HSPs)
chr5 (446-483)||(37340381-37340418)
chr5 (450-485)||(6702114-6702149)
chr5 (373-446)||(4077837-4077910)
chr5 (448-485)||(11298471-11298508)
chr5 (448-481)||(26113650-26113683)
chr5 (373-445)||(40946710-40946782)
[»] scaffold0096 (1 HSPs)
scaffold0096 (287-391)||(32812-32916)


Alignment Details
Target: chr7 (Bit Score: 137; Significance: 2e-71; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 180 - 441
Target Start/End: Complemental strand, 1971365 - 1971096
Alignment:
Q  180 agaaagagaagaagagggaagcatggggctctgtacagtttgcattggtattgaacaa------attaatggagaggtgagatagtaacat----tgttt 269  Q
    |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||      | |||||||||||||||||||||||||    ||| |    
T  1971365 agaaggagaagaagagggaagcatggggctctgtagagtttgcattggtattgaacaataaataaataatggagaggtgagatagtaacatcagttgtgt 1971266  T
Q  270 tgtttccctacatgcacgtgtatcaattttcaatgagtgagatttgatcaacggctgatatgttaacctcctctaattacaatgatctaacggtttggat 369  Q
    |||||| ||  |||| ||||||||||||||||| ||||||  ||||||||||||||||| || |||||||| ||||||| |||||||||||||| |||||    
T  1971265 tgtttctctgtatgcgcgtgtatcaattttcaaagagtga--tttgatcaacggctgatgtgctaacctcccctaattataatgatctaacggtctggat 1971168  T
Q  370 agattggagccaaaaaagtaggtttaatgttaggaaattagggtaagcattactgctaggattagatataaa 441  Q
    ||||||||||||||||||||| ||||  ||| ||||||||||||||||||   |||||||||||||||||||    
T  1971167 agattggagccaaaaaagtagatttagggtttggaaattagggtaagcatgtttgctaggattagatataaa 1971096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 161 - 395
Target Start/End: Original strand, 37362401 - 37362622
Alignment:
Q  161 tgtttaatcaaaatgtgacagaaagagaagaagagggaagcatggggctctgtacagtttgcattggtattgaacaaattaatggagaggtgagatagta 260  Q
    ||||||||||||||||||||||  |||||||||||||||||||||||||||||| |||||||||  ||||||||||||| |||||||| |    | ||      
T  37362401 tgtttaatcaaaatgtgacagagggagaagaagagggaagcatggggctctgtagagtttgcatcagtattgaacaaat-aatggagaaga---agag-- 37362494  T
Q  261 acattgttttgtttccctacatgcacgtgtatcaattttcaatgagtgagatttgatcaacggctgatatgttaacctcctctaattacaatgatctaac 360  Q
         ||||||||||||||  ||| ||||| ||||||||||| ||||||||||||||||||||||||| || ||||| |  |||||||||||||||||||    
T  37362495 -----gttttgtttcccta--tgcgcgtgtgtcaattttcaaggagtgagatttgatcaacggctgatgtgctaaccgctcctaattacaatgatctaac 37362587  T
Q  361 ggtttggatagattggagccaaaaaagtaggttta 395  Q
    | | |||||||||||||||||||||||||||||||    
T  37362588 gatctggatagattggagccaaaaaagtaggttta 37362622  T

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Target: chr7; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 11 - 83
Target Start/End: Complemental strand, 1971487 - 1971415
Alignment:
Q  11 cagagacggttgcagcggagacaaaacgaccaaaattgatgccgccatggatgatggtagtgatacggggggt 83  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  1971487 cagagacggttgcagcggagacaaaacgaccaaaattgatgccgccatggatgatggtggtgatacggagggt 1971415  T

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Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 287 - 375
Target Start/End: Complemental strand, 7841448 - 7841360
Alignment:
Q  287 gtgtatcaattttcaatgagtgagatttgatcaacggctgatatgttaacctcctctaattacaatgatctaacggtttggatagattg 375  Q
    |||| ||||||||||| |||||||||||||||||||||||||  | ||||  |  ||| |||||||||||||||||| ||||| |||||    
T  7841448 gtgtttcaattttcaaggagtgagatttgatcaacggctgatgcgctaacagctcctacttacaatgatctaacggtctggattgattg 7841360  T

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Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 186 - 239
Target Start/End: Complemental strand, 7841512 - 7841460
Alignment:
Q  186 agaagaagagggaagcatggggctctgtacagtttgcattggtattgaacaaat 239  Q
    |||||||||||||||||||||| |||||| |||||||| |||||||||||||||    
T  7841512 agaagaagagggaagcatggggttctgtagagtttgca-tggtattgaacaaat 7841460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 446 - 483
Target Start/End: Original strand, 39262777 - 39262814
Alignment:
Q  446 aaactagaacgccgacccgtgcgccgcacgggtcttat 483  Q
    ||||||||||||||||||||||||||||||||||||||    
T  39262777 aaactagaacgccgacccgtgcgccgcacgggtcttat 39262814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 445 - 483
Target Start/End: Original strand, 48844138 - 48844176
Alignment:
Q  445 taaactagaacgccgacccgtgcgccgcacgggtcttat 483  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  48844138 taaactagaacgccgacccgtgcgtcgcacgggtcttat 48844176  T

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Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 78 - 118
Target Start/End: Complemental strand, 1971400 - 1971360
Alignment:
Q  78 gggggtaggggaggaagttgaggaaaggaagatgaagaagg 118  Q
    |||||||||||| |||| |||||||||||||||||||||||    
T  1971400 gggggtaggggaagaaggtgaggaaaggaagatgaagaagg 1971360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 373 - 445
Target Start/End: Complemental strand, 24759546 - 24759474
Alignment:
Q  373 ttggagccaaaaaagtaggtttaatgttaggaaattagggtaagcattactgctaggattagatataaaggat 445  Q
    |||||||||||||  |||| |||  |||| ||||||||||||| |||   |||||||||||||||||||||||    
T  24759546 ttggagccaaaaacttaggattagggttaagaaattagggtaaacatgtttgctaggattagatataaaggat 24759474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 448 - 479
Target Start/End: Complemental strand, 2440106 - 2440075
Alignment:
Q  448 actagaacgccgacccgtgcgccgcacgggtc 479  Q
    ||||||||||||||||||||||||||||||||    
T  2440106 actagaacgccgacccgtgcgccgcacgggtc 2440075  T

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Target: chr1 (Bit Score: 110; Significance: 3e-55; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 265 - 445
Target Start/End: Original strand, 40981488 - 40981666
Alignment:
Q  265 tgttttgtttccctacatgcacgtgtatcaattttcaatgagtgagatttgatcaacggctgatatgttaacctcctctaattacaatgatctaacggtt 364  Q
    ||||| |||||||||  ||| |||||||||||||| || ||||||| ||||||||||||||||  || |||||||||||||||||||||||||||||||     
T  40981488 tgtttggtttcccta--tgcgcgtgtatcaatttttaaagagtgagttttgatcaacggctgaagtgctaacctcctctaattacaatgatctaacggtc 40981585  T
Q  365 tggatagattggagccaaaaaagtaggtttaatgttaggaaattagggtaagcattactgctaggattagatataaaggat 445  Q
    |||||||||||||||||||||||||||||||  ||| ||||||||||||||||||   |||||||||||||||||||||||    
T  40981586 tggatagattggagccaaaaaagtaggtttagggtttggaaattagggtaagcatgtttgctaggattagatataaaggat 40981666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 265 - 467
Target Start/End: Complemental strand, 50290611 - 50290411
Alignment:
Q  265 tgttttgtttccctacatgcacgtgtatcaattttcaatgagtgagatttgatcaacggctgatatgttaacctcctctaattacaatgatctaacggtt 364  Q
    |||||||||||||||  ||  ||| ||||||||||||| ||||||||||| ||||||| ||||| || |||||||||||||||| ||||||||||||||     
T  50290611 tgttttgtttcccta--tgagcgtctatcaattttcaaggagtgagattttatcaacgactgatgtgctaacctcctctaattataatgatctaacggtc 50290514  T
Q  365 tggatagattggagccaaaaaagtaggtttaatgttaggaaattagggtaagcattactgctaggattagatataaaggataaactagaacgccgacccg 464  Q
    |||||| ||||||||||||||| ||||||||  ||| |||| ||||| |||||||   || ||||||||||||||||||||| |||||| |  |||||||    
T  50290513 tggataaattggagccaaaaaaataggtttagggtttggaatttaggttaagcatgtttgttaggattagatataaaggatatactagaccatcgacccg 50290414  T
Q  465 tgc 467  Q
    |||    
T  50290413 tgc 50290411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 342 - 445
Target Start/End: Complemental strand, 29836342 - 29836239
Alignment:
Q  342 ctaattacaatgatctaacggtttggatagattggagccaaaaaagtaggtttaatgttaggaaattagggtaagcattactgctaggattagatataaa 441  Q
    ||||||| | ||||||||||||  ||||||||||||||||||||||||||||||  ||| || ||||||||||| |||   |||||||||||||||||||    
T  29836342 ctaattagattgatctaacggtcaggatagattggagccaaaaaagtaggtttagggtttggcaattagggtaaacatgtttgctaggattagatataaa 29836243  T
Q  442 ggat 445  Q
    ||||    
T  29836242 ggat 29836239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 165 - 264
Target Start/End: Original strand, 31770870 - 31770966
Alignment:
Q  165 taatcaaaatgtgacagaaagagaagaagagggaagcatggggctctgtacagtttgcattggtattgaacaaattaatggagaggtgagatagtaacat 264  Q
    ||||||||| ||||||||  |||||||||||||||||||||||| ||||| ||||||||| ||||||||||||  ||||||||||||| |||| ||||||    
T  31770870 taatcaaaa-gtgacagagggagaagaagagggaagcatggggcactgtagagtttgcatgggtattgaacaa--taatggagaggtgtgataataacat 31770966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 296 - 445
Target Start/End: Original strand, 27843642 - 27843791
Alignment:
Q  296 ttttcaatgagtgagatttgatc-aacggctgatatgttaacctcctctaattacaatgatctaacggtttggatagattggagccaaaaaagtaggttt 394  Q
    ||||||| ||||| ||||||||| |||||||||| || ||| || || |||||||||||||||||||||  ||||| | |||||||||||||||||| ||    
T  27843642 ttttcaaggagtgtgatttgatctaacggctgatgtgctaatcttct-taattacaatgatctaacggtcaggataaaatggagccaaaaaagtagggtt 27843740  T
Q  395 aatgttaggaaattagggtaagcattactgctaggattagatataaaggat 445  Q
       | | || |||||||||  || || ||||||||||||||||||||||||    
T  27843741 ggaggttggcaattagggtttgcgttgctgctaggattagatataaaggat 27843791  T

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Target: chr1; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 287 - 446
Target Start/End: Complemental strand, 6919708 - 6919549
Alignment:
Q  287 gtgtatcaattttcaatgagtgagatttgatc-aacggctgatatgttaacctcctctaattacaatgatctaacggtttggatagattggagccaaaaa 385  Q
    |||| ||| ||||||| ||||| ||||||||| |||||||||| || |||  |  |||||||||||||||||||||||  | ||| | ||||||||||||    
T  6919708 gtgtttcatttttcaaagagtgtgatttgatctaacggctgatgtgctaatttt-tctaattacaatgatctaacggtcagaataaaatggagccaaaaa 6919610  T
Q  386 agtaggtttaatgttaggaaattagggtaagcattactgctaggattagatataaaggata 446  Q
    |||||| |||  | | || |||||| ||  ||||| |||||||||||||||||||||||||    
T  6919609 agtagggttagaggttggcaattagagtttgcattgctgctaggattagatataaaggata 6919549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 185 - 263
Target Start/End: Original strand, 7607901 - 7607977
Alignment:
Q  185 gagaagaagagggaagcatggggctctgtacagtttgcattggtattgaacaaattaatggagaggtgagatagtaaca 263  Q
    |||||||||||||||||||||||| ||||| ||||||||| ||||||||||||  ||||||||||||| |||| |||||    
T  7607901 gagaagaagagggaagcatggggcactgtagagtttgcatgggtattgaacaa--taatggagaggtgtgataataaca 7607977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 352 - 445
Target Start/End: Original strand, 38240176 - 38240269
Alignment:
Q  352 tgatctaacggtttggatagattggagccaaaaaagtaggtttaatgttaggaaattagggtaagcattactgctaggattagatataaaggat 445  Q
    ||||||||||||| ||||| | |||||||||||||||||| |||  | | |  |||||||||  ||||| ||||||||||||||||||||||||    
T  38240176 tgatctaacggttaggataaaatggagccaaaaaagtagggttagaggttgacaattagggtttgcattgctgctaggattagatataaaggat 38240269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 293 - 386
Target Start/End: Complemental strand, 14184840 - 14184747
Alignment:
Q  293 caattttcaatgagtgagatttgatcaacggctgatatgttaacctcctctaattacaatgatctaacggtttggatagattggagccaaaaaa 386  Q
    ||||||| || |||||| |||||||||| | ||||| || ||||| || ||| ||| ||||||||||| |||||||| |||||| ||| |||||    
T  14184840 caatttttaaggagtgacatttgatcaatgactgatgtgctaaccgcccctacttataatgatctaacagtttggattgattggcgcctaaaaa 14184747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 448 - 485
Target Start/End: Original strand, 51382509 - 51382546
Alignment:
Q  448 actagaacgccgacccgtgcgccgcacgggtcttatga 485  Q
    |||||||||||||||| |||||||||||||||||||||    
T  51382509 actagaacgccgacccatgcgccgcacgggtcttatga 51382546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 447 - 481
Target Start/End: Complemental strand, 38509069 - 38509035
Alignment:
Q  447 aactagaacgccgacccgtgcgccgcacgggtctt 481  Q
    |||||||||||| ||||||||||||||||||||||    
T  38509069 aactagaacgccaacccgtgcgccgcacgggtctt 38509035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 448 - 481
Target Start/End: Complemental strand, 39183272 - 39183239
Alignment:
Q  448 actagaacgccgacccgtgcgccgcacgggtctt 481  Q
    ||||||||||||| ||||||||||||||||||||    
T  39183272 actagaacgccgatccgtgcgccgcacgggtctt 39183239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 98; Significance: 5e-48; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 265 - 445
Target Start/End: Original strand, 14210313 - 14210491
Alignment:
Q  265 tgttttgtttccctacatgcacgtgtatcaattttcaatgagtgagatttgatcaacggctgatatgttaacctcctctaattacaatgatctaacggtt 364  Q
    |||||||||| ||||  ||| ||||||||||||||||| || |||||||||||||| |||| || || |||||||| ||||||||||||||||||||||     
T  14210313 tgttttgttttccta--tgcgcgtgtatcaattttcaaggaatgagatttgatcaatggctcatgtgctaacctcccctaattacaatgatctaacggtc 14210410  T
Q  365 tggatagattggagccaaaaaagtaggtttaatgttaggaaattagggtaagcattactgctaggattagatataaaggat 445  Q
    ||||||| ||||||||||||||||||||| |  ||| ||||||||||||||||||   |||||||||||||||||||||||    
T  14210411 tggatagtttggagccaaaaaagtaggttaagggtttggaaattagggtaagcatgtttgctaggattagatataaaggat 14210491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 265 - 445
Target Start/End: Original strand, 14211282 - 14211460
Alignment:
Q  265 tgttttgtttccctacatgcacgtgtatcaattttcaatgagtgagatttgatcaacggctgatatgttaacctcctctaattacaatgatctaacggtt 364  Q
    |||||||||| ||||  ||| ||||||||||||||||| || |||||||||||||| |||| || || |||||||| ||||||||||||||||||||||     
T  14211282 tgttttgttttccta--tgcgcgtgtatcaattttcaaggaatgagatttgatcaatggctcatgtgctaacctcccctaattacaatgatctaacggtc 14211379  T
Q  365 tggatagattggagccaaaaaagtaggtttaatgttaggaaattagggtaagcattactgctaggattagatataaaggat 445  Q
    ||||||| ||||||||||||||||||||| |  ||| ||||||||||||||||||   |||||||||||||||||||||||    
T  14211380 tggatagtttggagccaaaaaagtaggttaagggtttggaaattagggtaagcatgtttgctaggattagatataaaggat 14211460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 265 - 445
Target Start/End: Original strand, 14212233 - 14212411
Alignment:
Q  265 tgttttgtttccctacatgcacgtgtatcaattttcaatgagtgagatttgatcaacggctgatatgttaacctcctctaattacaatgatctaacggtt 364  Q
    |||||||||| ||||  ||| ||||||||||||||||| || |||||||||||||| |||| || || |||||||| ||||||||||||||||||||||     
T  14212233 tgttttgttttccta--tgcgcgtgtatcaattttcaaggaatgagatttgatcaatggctcatgtgctaacctcccctaattacaatgatctaacggtc 14212330  T
Q  365 tggatagattggagccaaaaaagtaggtttaatgttaggaaattagggtaagcattactgctaggattagatataaaggat 445  Q
    ||||||| ||||||||||||||||||||| |  ||| ||||||||||||||||||   |||||||||||||||||||||||    
T  14212331 tggatagtttggagccaaaaaagtaggttaagggtttggaaattagggtaagcatgtttgctaggattagatataaaggat 14212411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 265 - 445
Target Start/End: Original strand, 14214170 - 14214348
Alignment:
Q  265 tgttttgtttccctacatgcacgtgtatcaattttcaatgagtgagatttgatcaacggctgatatgttaacctcctctaattacaatgatctaacggtt 364  Q
    |||||||||| ||||  ||| ||||||||||||||||| || |||||||||||||| |||| || || |||||||| ||||||||||||||||||||||     
T  14214170 tgttttgttttccta--tgcgcgtgtatcaattttcaaggaatgagatttgatcaatggctcatgtgctaacctcccctaattacaatgatctaacggtc 14214267  T
Q  365 tggatagattggagccaaaaaagtaggtttaatgttaggaaattagggtaagcattactgctaggattagatataaaggat 445  Q
    ||||||| ||||||||||||||||||||| |  ||| ||||||||||||||||||   |||||||||||||||||||||||    
T  14214268 tggatagtttggagccaaaaaagtaggttaagggtttggaaattagggtaagcatgtttgctaggattagatataaaggat 14214348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 265 - 445
Target Start/End: Original strand, 14215139 - 14215317
Alignment:
Q  265 tgttttgtttccctacatgcacgtgtatcaattttcaatgagtgagatttgatcaacggctgatatgttaacctcctctaattacaatgatctaacggtt 364  Q
    |||||||||| ||||  ||| ||||||||||||||||| || |||||||||||||| |||| || || |||||||| ||||||||||||||||||||||     
T  14215139 tgttttgttttccta--tgcgcgtgtatcaattttcaaggaatgagatttgatcaatggctcatgtgctaacctcccctaattacaatgatctaacggtc 14215236  T
Q  365 tggatagattggagccaaaaaagtaggtttaatgttaggaaattagggtaagcattactgctaggattagatataaaggat 445  Q
    ||||||| ||||||||||||||||||||| |  ||| ||||||||||||||||||   |||||||||||||||||||||||    
T  14215237 tggatagtttggagccaaaaaagtaggttaagggtttggaaattagggtaagcatgtttgctaggattagatataaaggat 14215317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 265 - 445
Target Start/End: Original strand, 14218010 - 14218188
Alignment:
Q  265 tgttttgtttccctacatgcacgtgtatcaattttcaatgagtgagatttgatcaacggctgatatgttaacctcctctaattacaatgatctaacggtt 364  Q
    |||||||||| ||||  ||| ||||||||||||||||| || |||||||||||||| |||| || || |||||||| ||||||||||||||||||||||     
T  14218010 tgttttgttttccta--tgcgcgtgtatcaattttcaaggaatgagatttgatcaatggctcatgtgctaacctcccctaattacaatgatctaacggtc 14218107  T
Q  365 tggatagattggagccaaaaaagtaggtttaatgttaggaaattagggtaagcattactgctaggattagatataaaggat 445  Q
    ||||||| ||||||||||||||||||||| |  ||| ||||||||||||||||||   |||||||||||||||||||||||    
T  14218108 tggatagtttggagccaaaaaagtaggttaagggtttggaaattagggtaagcatgtttgctaggattagatataaaggat 14218188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 265 - 445
Target Start/End: Original strand, 14219949 - 14220127
Alignment:
Q  265 tgttttgtttccctacatgcacgtgtatcaattttcaatgagtgagatttgatcaacggctgatatgttaacctcctctaattacaatgatctaacggtt 364  Q
    |||||||||| ||||  ||| ||||||||||||||||| || |||||||||||||| |||| || || |||||||| ||||||||||||||||||||||     
T  14219949 tgttttgttttccta--tgcgcgtgtatcaattttcaaggaatgagatttgatcaatggctcatgtgctaacctcccctaattacaatgatctaacggtc 14220046  T
Q  365 tggatagattggagccaaaaaagtaggtttaatgttaggaaattagggtaagcattactgctaggattagatataaaggat 445  Q
    ||||||| ||||||||||||||||||||| |  ||| ||||||||||||||||||   |||||||||||||||||||||||    
T  14220047 tggatagtttggagccaaaaaagtaggttaagggtttggaaattagggtaagcatgtttgctaggattagatataaaggat 14220127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 265 - 445
Target Start/End: Original strand, 14220900 - 14221078
Alignment:
Q  265 tgttttgtttccctacatgcacgtgtatcaattttcaatgagtgagatttgatcaacggctgatatgttaacctcctctaattacaatgatctaacggtt 364  Q
    |||||||||| ||||  ||| ||||||||||||||||| || |||||||||||||| |||| || || |||||||| ||||||||||||||||||||||     
T  14220900 tgttttgttttccta--tgcgcgtgtatcaattttcaaggaatgagatttgatcaatggctcatgtgctaacctcccctaattacaatgatctaacggtc 14220997  T
Q  365 tggatagattggagccaaaaaagtaggtttaatgttaggaaattagggtaagcattactgctaggattagatataaaggat 445  Q
    ||||||| ||||||||||||||||||||| |  ||| ||||||||||||||||||   |||||||||||||||||||||||    
T  14220998 tggatagtttggagccaaaaaagtaggttaagggtttggaaattagggtaagcatgtttgctaggattagatataaaggat 14221078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 265 - 445
Target Start/End: Original strand, 14209362 - 14209540
Alignment:
Q  265 tgttttgtttccctacatgcacgtgtatcaattttcaatgagtgagatttgatcaacggctgatatgttaacctcctctaattacaatgatctaacggtt 364  Q
    |||||||||| ||||  ||| ||||||||||||||||| || |||||||||||||| |||| || || |||||||| ||||||||||||||||||||||     
T  14209362 tgttttgttttccta--tgcgcgtgtatcaattttcaaggaatgagatttgatcaatggctcatgtgctaacctcccctaattacaatgatctaacggtc 14209459  T
Q  365 tggatagattggagccaaaaaagtaggtttaatgttaggaaattagggtaagcattactgctaggattagatataaaggat 445  Q
    ||||||| ||||||||||||||||||||| |  ||| ||||||||||||||||||   ||||| |||||||||||||||||    
T  14209460 tggatagtttggagccaaaaaagtaggttaagggtttggaaattagggtaagcatgtttgctacgattagatataaaggat 14209540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 288 - 445
Target Start/End: Original strand, 14213223 - 14213380
Alignment:
Q  288 tgtatcaattttcaatgagtgagatttgatcaacggctgatatgttaacctcctctaattacaatgatctaacggtttggatagattggagccaaaaaag 387  Q
    ||||||||||||||| || |||||||||||||| |||| || || |||||||| |||||||||||||||||||||| ||||||| |||||||||||||||    
T  14213223 tgtatcaattttcaaggaatgagatttgatcaatggctcatgtgctaacctcccctaattacaatgatctaacggtctggatagtttggagccaaaaaag 14213322  T
Q  388 taggtttaatgttaggaaattagggtaagcattactgctaggattagatataaaggat 445  Q
    |||||| |  ||| ||||||||||||||||||   |||||||||||||||||||||||    
T  14213323 taggttaagggtttggaaattagggtaagcatgtttgctaggattagatataaaggat 14213380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 265 - 445
Target Start/End: Original strand, 14216108 - 14216286
Alignment:
Q  265 tgttttgtttccctacatgcacgtgtatcaattttcaatgagtgagatttgatcaacggctgatatgttaacctcctctaattacaatgatctaacggtt 364  Q
    |||||||||| ||||  ||| ||||||||||||||||| || |||||||||||||| |||| || || |||||||| ||||||||||||||||||||||     
T  14216108 tgttttgttttccta--tgcgcgtgtatcaattttcaaggaatgagatttgatcaatggctcatgtgctaacctcccctaattacaatgatctaacggtc 14216205  T
Q  365 tggatagattggagccaaaaaagtaggtttaatgttaggaaattagggtaagcattactgctaggattagatataaaggat 445  Q
    ||||||| ||||||||||||||||||||| |  ||| ||||||||||||||||||   ||||||||||| |||||||||||    
T  14216206 tggatagtttggagccaaaaaagtaggttaagggtttggaaattagggtaagcatgtttgctaggattatatataaaggat 14216286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 265 - 445
Target Start/End: Original strand, 14217059 - 14217237
Alignment:
Q  265 tgttttgtttccctacatgcacgtgtatcaattttcaatgagtgagatttgatcaacggctgatatgttaacctcctctaattacaatgatctaacggtt 364  Q
    |||||||||| ||||  ||| ||||||||||||||||| || |||||||||||||| |||| || || |||||||| ||||||||||||||||||||||     
T  14217059 tgttttgttttccta--tgcgcgtgtatcaattttcaaggaatgagatttgatcaatggctcatgtgctaacctcccctaattacaatgatctaacggtc 14217156  T
Q  365 tggatagattggagccaaaaaagtaggtttaatgttaggaaattagggtaagcattactgctaggattagatataaaggat 445  Q
    ||||||| ||||||||||||||||||||| |  ||| ||||||||||||||||||   ||||| |||||||||||||||||    
T  14217157 tggatagtttggagccaaaaaagtaggttaagggtttggaaattagggtaagcatgtttgctacgattagatataaaggat 14217237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 288 - 445
Target Start/End: Original strand, 14219001 - 14219158
Alignment:
Q  288 tgtatcaattttcaatgagtgagatttgatcaacggctgatatgttaacctcctctaattacaatgatctaacggtttggatagattggagccaaaaaag 387  Q
    ||||||||||||||| || |||||||||||||| |||| || || |||||||| |||||||||||||||||||||| ||||||| |||||||||||||||    
T  14219001 tgtatcaattttcaaggaatgagatttgatcaatggctcatgtgctaacctcccctaattacaatgatctaacggtctggatagtttggagccaaaaaag 14219100  T
Q  388 taggtttaatgttaggaaattagggtaagcattactgctaggattagatataaaggat 445  Q
    |||||| |  ||| ||||||||||||||||||   |||||||||||||||||||||||    
T  14219101 taggttaagggtttggaaattagggtaagcatgtttgctaggattagatataaaggat 14219158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 265 - 445
Target Start/End: Original strand, 14221869 - 14222047
Alignment:
Q  265 tgttttgtttccctacatgcacgtgtatcaattttcaatgagtgagatttgatcaacggctgatatgttaacctcctctaattacaatgatctaacggtt 364  Q
    |||||||||| ||||  ||| ||||||||||||||||| || |||||||||||||| |||| || || |||||||| ||||||| ||||||||||||||     
T  14221869 tgttttgttttccta--tgcgcgtgtatcaattttcaaggaatgagatttgatcaatggctcatgtgctaacctcccctaattaaaatgatctaacggtc 14221966  T
Q  365 tggatagattggagccaaaaaagtaggtttaatgttaggaaattagggtaagcattactgctaggattagatataaaggat 445  Q
    ||||||| ||||||||||||||||||||| |  ||| ||||||||||||||||||   |||||||||||||||||||||||    
T  14221967 tggatagtttggagccaaaaaagtaggttaagggtttggaaattagggtaagcatgtttgctaggattagatataaaggat 14222047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 265 - 445
Target Start/End: Original strand, 14222838 - 14223016
Alignment:
Q  265 tgttttgtttccctacatgcacgtgtatcaattttcaatgagtgagatttgatcaacggctgatatgttaacctcctctaattacaatgatctaacggtt 364  Q
    |||||||||| ||||  ||| ||||||||||||||||| || |||||||||||||| |||| || || |||||||| |||||||||||||||||| |||     
T  14222838 tgttttgttttccta--tgcgcgtgtatcaattttcaaggaatgagatttgatcaatggctcatgtgctaacctcccctaattacaatgatctaatggtc 14222935  T
Q  365 tggatagattggagccaaaaaagtaggtttaatgttaggaaattagggtaagcattactgctaggattagatataaaggat 445  Q
    ||||||| ||||||||||||||||||||| |  ||| ||||||||||||||||||   |||||||||||||||||||||||    
T  14222936 tggatagtttggagccaaaaaagtaggttaagggtttggaaattagggtaagcatgtttgctaggattagatataaaggat 14223016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 165 - 376
Target Start/End: Complemental strand, 41810445 - 41810243
Alignment:
Q  165 taatcaaaatgtgacagaaagagaagaagagggaagcatggggctctgtacagtttgcattggtattgaacaaattaatggagaggtgagatagtaacat 264  Q
    ||||||||| ||||||||  |||||||||||||||||||||||| ||||| ||||||||| ||||||||||||  ||||||||||||| |||| |||||     
T  41810445 taatcaaaa-gtgacagagggagaagaagagggaagcatggggcactgtagagtttgcatgggtattgaacaa--taatggagaggtgtgataataaca- 41810350  T
Q  265 tgttttgtttccctacatgcacgtgtatcaattttcaatgagtgagatttgatcaacggctgatatgttaacctcctctaattacaatgatctaacggtt 364  Q
       |  |||| || ||  || |||||  |||||||||| ||||||||||||||||| || ||||||| ||||| || ||| ||||||||||||||||||     
T  41810349 ---tcagttttccgac--gcgcgtgttacaattttcaaggagtgagatttgatcaatggttgatatgctaaccgcccctacttacaatgatctaacggtc 41810255  T
Q  365 tggatagattgg 376  Q
    ||||| ||||||    
T  41810254 tggattgattgg 41810243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 373 - 445
Target Start/End: Complemental strand, 30176112 - 30176040
Alignment:
Q  373 ttggagccaaaaaagtaggtttaatgttaggaaattagggtaagcattactgctaggattagatataaaggat 445  Q
    |||||||||||||  |||| |||  ||||| |||||||||||||||||||||||||||||| |||||||||||    
T  30176112 ttggagccaaaaacttaggattagggttagaaaattagggtaagcattactgctaggattaaatataaaggat 30176040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 444 - 485
Target Start/End: Original strand, 16030585 - 16030626
Alignment:
Q  444 ataaactagaacgccgacccgtgcgccgcacgggtcttatga 485  Q
    |||||||||||| |||||||||||||||||||||||||||||    
T  16030585 ataaactagaacaccgacccgtgcgccgcacgggtcttatga 16030626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 373 - 441
Target Start/End: Complemental strand, 11214910 - 11214843
Alignment:
Q  373 ttggagccaaaaaagtaggtttaatgttaggaaattagggtaagcattactgctaggattagatataaa 441  Q
    |||||||||||||  |||| |||  |||| ||||||||||||||||| |||||||||||||||||||||    
T  11214910 ttggagccaaaaat-taggattagggttaagaaattagggtaagcatcactgctaggattagatataaa 11214843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 373 - 441
Target Start/End: Complemental strand, 11225421 - 11225354
Alignment:
Q  373 ttggagccaaaaaagtaggtttaatgttaggaaattagggtaagcattactgctaggattagatataaa 441  Q
    |||||||||||||  |||| |||  |||| ||||||||||||||||| |||||||||||||||||||||    
T  11225421 ttggagccaaaaat-taggattagggttaagaaattagggtaagcatcactgctaggattagatataaa 11225354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 447 - 485
Target Start/End: Complemental strand, 2304341 - 2304303
Alignment:
Q  447 aactagaacgccgacccgtgcgccgcacgggtcttatga 485  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  2304341 aactagaacgccgacccgtgcgccgcatgggtcttatga 2304303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 310 - 391
Target Start/End: Original strand, 1068910 - 1068991
Alignment:
Q  310 gatttgatc-aacggctgatatgttaacctcctctaattacaatgatctaacggtttggatagattggagccaaaaaagtagg 391  Q
    ||||||||| |||||||||| || ||| || | ||||||||||||||||||| ||  ||||| | ||||||||||||||||||    
T  1068910 gatttgatctaacggctgatgtgctaatcttc-ctaattacaatgatctaacagtcaggataaaatggagccaaaaaagtagg 1068991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 445 - 485
Target Start/End: Complemental strand, 33315969 - 33315929
Alignment:
Q  445 taaactagaacgccgacccgtgcgccgcacgggtcttatga 485  Q
    |||||||||||||||| | || |||||||||||||||||||    
T  33315969 taaactagaacgccgatctgttcgccgcacgggtcttatga 33315929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 96; Significance: 7e-47; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 186 - 440
Target Start/End: Complemental strand, 53689487 - 53689246
Alignment:
Q  186 agaagaagagggaagcatggggctctgtacagtttgcattggtattgaacaaattaatggagaggtgagatagtaacattgttttgtttccctacatgca 285  Q
    ||||||||||||||||||||||||||||| ||||||||| |||||||||||||| ||| ||||    |||  |       ||||||||||||||  |||     
T  53689487 agaagaagagggaagcatggggctctgtagagtttgcatcggtattgaacaaat-aatagaga----agaaggg------gttttgtttcccta--tgcg 53689401  T
Q  286 cgtgtatcaattttcaatgagtgagatttgatcaacggctgatatgttaacctcctctaattacaatgatctaacggtttggatagattggagccaaaaa 385  Q
    ||||| | ||||||||| ||||||||||||||||| ||||||| || ||||||||  |||||||||||||||||||||  ||||||||||||||||||||    
T  53689400 cgtgtgttaattttcaaggagtgagatttgatcaatggctgatgtgctaacctcccttaattacaatgatctaacggtcaggatagattggagccaaaaa 53689301  T
Q  386 agtaggtttaatgttaggaaattagggtaagcattactgctaggattagatataa 440  Q
    ||||||||||  ||| || |||||||||||||||   ||||||||||| ||||||    
T  53689300 agtaggtttagggtttggcaattagggtaagcatgtttgctaggattaaatataa 53689246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 288 - 411
Target Start/End: Original strand, 12812821 - 12812944
Alignment:
Q  288 tgtatcaattttcaatgagtgagatttgatcaacggctgatatgttaacctcctctaattacaatgatctaacggtttggatagattggagccaaaaaag 387  Q
    ||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||||||| ||||||||||||||| |||||||    
T  12812821 tgtatcaattttcaatgagtgagatttgatcaacggctgatgtgctaacctcccctaattacaatgatctaacggtctggatagattggagcgaaaaaag 12812920  T
Q  388 taggtttaatgttaggaaattagg 411  Q
    |||||||   ||| ||||||||||    
T  12812921 taggtttggggtttggaaattagg 12812944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 185 - 395
Target Start/End: Original strand, 52311477 - 52311676
Alignment:
Q  185 gagaagaagagggaagcatggggctctgtacagtttgcattggtattgaacaaattaatggagaggtgagatagtaacattgttttgtttccctacatgc 284  Q
    ||||||||||||| | |||||||||||||| ||||||||| |||||||||||||| |||||||| |    | ||       |||||||||||| | ||||    
T  52311477 gagaagaagagggcaacatggggctctgtagagtttgcatcggtattgaacaaat-aatggagaaga---agag-------gttttgtttccccatatgc 52311565  T
Q  285 acgtgtatcaattttcaatgagtgagatttgatcaacggctgatatgttaacctcctctaattacaatgatctaacggtttggatagattggagccaaaa 384  Q
     | ||| ||||||||||| ||||||||||||||||||| ||||| || |||||||| ||||||||||| ||||||||||  ||||||||||||| |||||    
T  52311566 gcatgtgtcaattttcaaggagtgagatttgatcaacgactgatgtgctaacctcccctaattacaatcatctaacggtcaggatagattggaggcaaaa 52311665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 287 - 446
Target Start/End: Original strand, 45458409 - 45458567
Alignment:
Q  287 gtgtatcaattttcaatgagtgagatttgatcaacggctgatatgttaacc-tcctctaattacaatgatctaacggtttggatagattggagccaaaaa 385  Q
    |||| ||||||||||| ||||||||||||||||| |||| || |||||||| |||| ||||||||||||||||||| ||||||| |||||||| ||||||    
T  45458409 gtgtttcaattttcaaggagtgagatttgatcaagggctcatgtgttaaccatcct-taattacaatgatctaacgatttggatggattggagtcaaaaa 45458507  T
Q  386 agtaggtttaatgttaggaaattagggtaagcattactgctaggattagatataaaggata 446  Q
    ||||| ||||| ||| ||||||||||||||||||   | ||||||| ||||||||||||||    
T  45458508 agtagatttaaggtt-ggaaattagggtaagcatgtttactaggatcagatataaaggata 45458567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 373 - 447
Target Start/End: Complemental strand, 43399522 - 43399448
Alignment:
Q  373 ttggagccaaaaaagtaggtttaatgttaggaaattagggtaagcattactgctaggattagatataaaggataa 447  Q
    |||||||||||||  |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43399522 ttggagccaaaaacttaggattaaggttaggaaattagggtaagcattactgctaggattagatataaaggataa 43399448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 342 - 445
Target Start/End: Complemental strand, 29129233 - 29129130
Alignment:
Q  342 ctaattacaatgatctaacggtttggatagattggagccaaaaaagtaggtttaatgttaggaaattagggtaagcattactgctaggattagatataaa 441  Q
    ||||||| | ||||||||||||  ||||||||||||||||||||||||||||||  ||| || ||||||||||| |||   |||||||||||||||||||    
T  29129233 ctaattagattgatctaacggtcaggatagattggagccaaaaaagtaggtttagggtttggcaattagggtaaacatgtttgctaggattagatataaa 29129134  T
Q  442 ggat 445  Q
    ||||    
T  29129133 ggat 29129130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 265 - 361
Target Start/End: Original strand, 14459162 - 14459256
Alignment:
Q  265 tgttttgtttccctacatgcacgtgtatcaattttcaatgagtgagatttgatcaacggctgatatgttaacctcctctaattacaatgatctaacg 361  Q
    |||||||||||||||  ||| ||||||||||||||||| ||||||||||||||||||| ||||| || |||||||| ||| ||| ||||||||||||    
T  14459162 tgttttgtttcccta--tgctcgtgtatcaattttcaaggagtgagatttgatcaacgactgatgtgctaacctcccctagttataatgatctaacg 14459256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 165 - 252
Target Start/End: Complemental strand, 52131043 - 52130959
Alignment:
Q  165 taatcaaaatgtgacagaaagagaagaagagggaagcatggggctctgtacagtttgcattggtattgaacaaattaatggagaggtg 252  Q
    ||||||||| ||||||||  |||||||||||||||||||||||| ||||| ||||||||| ||||||||||||  |||||||||||||    
T  52131043 taatcaaaa-gtgacagagggagaagaagagggaagcatggggcactgtagagtttgcatcggtattgaacaa--taatggagaggtg 52130959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 293 - 386
Target Start/End: Complemental strand, 52130943 - 52130851
Alignment:
Q  293 caattttcaatgagtgagatttgatcaacggctgatatgttaacctcctctaattacaatgatctaacggtttggatagattggagccaaaaaa 386  Q
    |||||||||| ||||||||||||||||| || |||| || |||||||| ||| |||||||||||||||||| ||||| |||||| ||| |||||    
T  52130943 caattttcaa-gagtgagatttgatcaatggttgatgtgctaacctcccctacttacaatgatctaacggtctggattgattggcgcctaaaaa 52130851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 268 - 363
Target Start/End: Complemental strand, 25489653 - 25489560
Alignment:
Q  268 tttgtttccctacatgcacgtgtatcaattttcaatgagtgagatttgatcaacggctgatatgttaacctcctctaattacaatgatctaacggt 363  Q
    ||||||||||||  ||||||||| |||||||| ||  ||||||||||||| |||||||||| |  ||||| |  ||||||||||||||||||||||    
T  25489653 tttgtttcccta--tgcacgtgtttcaatttttaagaagtgagatttgataaacggctgatgtactaaccgctcctaattacaatgatctaacggt 25489560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 373 - 445
Target Start/End: Complemental strand, 52126957 - 52126885
Alignment:
Q  373 ttggagccaaaaaagtaggtttaatgttaggaaattagggtaagcattactgctaggattagatataaaggat 445  Q
    |||||||||||||  |||| |||  |||| |||||||||||||||||   |||||||||||||||||||||||    
T  52126957 ttggagccaaaaacttaggattagggttaagaaattagggtaagcatgtttgctaggattagatataaaggat 52126885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 447 - 479
Target Start/End: Complemental strand, 50719236 - 50719204
Alignment:
Q  447 aactagaacgccgacccgtgcgccgcacgggtc 479  Q
    |||||||||||||||||||||||||||||||||    
T  50719236 aactagaacgccgacccgtgcgccgcacgggtc 50719204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 447 - 479
Target Start/End: Original strand, 50793612 - 50793644
Alignment:
Q  447 aactagaacgccgacccgtgcgccgcacgggtc 479  Q
    |||||||||||||||||||||||||||||||||    
T  50793612 aactagaacgccgacccgtgcgccgcacgggtc 50793644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 287 - 440
Target Start/End: Original strand, 53556759 - 53556912
Alignment:
Q  287 gtgtatcaattttcaatgagtgagatttgatc-aacggctgatatgttaacctcctctaattacaatgatctaacggtttggatagattggagccaaaaa 385  Q
    |||| ||| ||||||| ||||| ||||||||| |||||||||  || ||| || || ||||||||| |||||||| ||   |||| | |||||| |||||    
T  53556759 gtgtttcatttttcaaggagtgtgatttgatctaacggctgaagtgctaatcttct-taattacaacgatctaacagtcacgataaaatggagctaaaaa 53556857  T
Q  386 agtaggtttaatgttaggaaattagggtaagcattactgctaggattagatataa 440  Q
    |||||| |||  | | || |||||||||  | ||| |||||||||||||||||||    
T  53556858 agtagggttagaggttggcaattagggtttgtatttctgctaggattagatataa 53556912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 448 - 481
Target Start/End: Complemental strand, 29157558 - 29157525
Alignment:
Q  448 actagaacgccgacccgtgcgccgcacgggtctt 481  Q
    ||||||||||||||||||||| ||||||||||||    
T  29157558 actagaacgccgacccgtgcggcgcacgggtctt 29157525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 94; Significance: 1e-45; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 265 - 445
Target Start/End: Original strand, 31409598 - 31409776
Alignment:
Q  265 tgttttgtttccctacatgcacgtgtatcaattttcaatgagtgagatttgatcaacggctgatatgttaacctcctctaattacaatgatctaacggtt 364  Q
    |||||||||| ||||  ||| ||||||||||||||||| || |||||||||||||| |||| || || |||||||| ||||||||||||||||||||||     
T  31409598 tgttttgttttccta--tgcgcgtgtatcaattttcaaggaatgagatttgatcaatggctcatgtgctaacctcccctaattacaatgatctaacggtc 31409695  T
Q  365 tggatagattggagccaaaaaagtaggtttaatgttaggaaattagggtaagcattactgctaggattagatataaaggat 445  Q
    ||||||| ||||||||||||||||||||| |  ||| ||||||||||||||||||   ||||||||||| |||||||||||    
T  31409696 tggatagtttggagccaaaaaagtaggttaagggtttggaaattagggtaagcatgtttgctaggattatatataaaggat 31409776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 373 - 447
Target Start/End: Original strand, 22145644 - 22145718
Alignment:
Q  373 ttggagccaaaaaagtaggtttaatgttaggaaattagggtaagcattactgctaggattagatataaaggataa 447  Q
    |||||||||||||  |||| |||  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22145644 ttggagccaaaaacttaggattagggttaggaaattagggtaagcattactgctaggattagatataaaggataa 22145718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 448 - 485
Target Start/End: Complemental strand, 6673957 - 6673920
Alignment:
Q  448 actagaacgccgacccgtgcgccgcacgggtcttatga 485  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  6673957 actagaaggccgacccgtgcgccgcacgggtcttatga 6673920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 373 - 446
Target Start/End: Complemental strand, 26449165 - 26449092
Alignment:
Q  373 ttggagccaaaaaagtaggtttaatgttaggaaattagggtaagcattactgctaggattagatataaaggata 446  Q
    |||||||||||||| |||  |||  ||| || |||||||||||||||   ||||||||||||||||||||||||    
T  26449165 ttggagccaaaaaattagaattagggtttggcaattagggtaagcatgtttgctaggattagatataaaggata 26449092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 373 - 446
Target Start/End: Complemental strand, 38403427 - 38403354
Alignment:
Q  373 ttggagccaaaaaagtaggtttaatgttaggaaattagggtaagcattactgctaggattagatataaaggata 446  Q
    |||||||||||||| |||| |||  ||| || || ||||||  ||||| |||||||||||||||||||||||||    
T  38403427 ttggagccaaaaaattaggattagggtttggcaaatagggtttgcattgctgctaggattagatataaaggata 38403354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 448 - 481
Target Start/End: Complemental strand, 16970298 - 16970265
Alignment:
Q  448 actagaacgccgacccgtgcgccgcacgggtctt 481  Q
    ||||||||||||||||||||| ||||||||||||    
T  16970298 actagaacgccgacccgtgcgtcgcacgggtctt 16970265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 448 - 481
Target Start/End: Complemental strand, 28003511 - 28003478
Alignment:
Q  448 actagaacgccgacccgtgcgccgcacgggtctt 481  Q
    |||||||||||||||| |||||||||||||||||    
T  28003511 actagaacgccgacccttgcgccgcacgggtctt 28003478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 446 - 483
Target Start/End: Complemental strand, 32286971 - 32286934
Alignment:
Q  446 aaactagaacgccgacccgtgcgccgcacgggtcttat 483  Q
    ||||||||  ||||||||||||||||||||||||||||    
T  32286971 aaactagatagccgacccgtgcgccgcacgggtcttat 32286934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 444 - 481
Target Start/End: Original strand, 38943997 - 38944034
Alignment:
Q  444 ataaactagaacgccgacccgtgcgccgcacgggtctt 481  Q
    |||||||||| |||||||||||||||||||| ||||||    
T  38943997 ataaactagatcgccgacccgtgcgccgcacaggtctt 38944034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 448 - 481
Target Start/End: Original strand, 38993391 - 38993424
Alignment:
Q  448 actagaacgccgacccgtgcgccgcacgggtctt 481  Q
    |||||||||| |||||||||||||||||||||||    
T  38993391 actagaacgctgacccgtgcgccgcacgggtctt 38993424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 451 - 479
Target Start/End: Complemental strand, 27535002 - 27534974
Alignment:
Q  451 agaacgccgacccgtgcgccgcacgggtc 479  Q
    |||||||||||||||||||||||||||||    
T  27535002 agaacgccgacccgtgcgccgcacgggtc 27534974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 81; Significance: 6e-38; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 11 - 131
Target Start/End: Complemental strand, 19962499 - 19962380
Alignment:
Q  11 cagagacggttgcagcggagacaaaacgaccaaaattgatgccgccatggatgatggtagtgatacggggggtaggggaggaagttgaggaaaggaagat 110  Q
    |||||||||||||||  ||||||||||||||||| ||| ||||||||||||||||||| |||||||| ||||||||||| |||| ||||||||||| |||    
T  19962499 cagagacggttgcagtagagacaaaacgaccaaagttggtgccgccatggatgatggtggtgatacg-ggggtaggggaagaaggtgaggaaaggatgat 19962401  T
Q  111 gaagaagggttcaagaaacca 131  Q
    |||||||||||||||||||||    
T  19962400 gaagaagggttcaagaaacca 19962380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 292 - 445
Target Start/End: Original strand, 29729269 - 29729421
Alignment:
Q  292 tcaattttcaatgagtgagatttgatcaacggctgatatgttaacctcctctaattacaatgatctaacggtttggatagattggagccaaaaaagtagg 391  Q
    ||||||||||  |||||||||||||||||||| |||| |||||||| |  |||||||||||||||||| ||| ||||| |||||||||||||||| ||||    
T  29729269 tcaattttcatggagtgagatttgatcaacggttgatgtgttaaccgctcctaattacaatgatctaatggtctggattgattggagccaaaaaattagg 29729368  T
Q  392 tttaatgttaggaaattagggtaagcattactgctaggattagatataaaggat 445  Q
    ||||| ||| || |||||||||||||| || |||| |||||| |||||||||||    
T  29729369 tttaaggtttggcaattagggtaagca-tattgcttggattaaatataaaggat 29729421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 373 - 447
Target Start/End: Complemental strand, 8022796 - 8022722
Alignment:
Q  373 ttggagccaaaaaagtaggtttaatgttaggaaattagggtaagcattactgctaggattagatataaaggataa 447  Q
    |||||||||||||  |||| |||  |||||||||||||||||| |||||||||||||||||||||||||||||||    
T  8022796 ttggagccaaaaacttaggattagggttaggaaattagggtaaacattactgctaggattagatataaaggataa 8022722  T

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Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 446 - 485
Target Start/End: Original strand, 45239359 - 45239398
Alignment:
Q  446 aaactagaacgccgacccgtgcgccgcacgggtcttatga 485  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  45239359 aaactagaacgccgacccgtgcgccgcacgggtcttatga 45239398  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 342 - 391
Target Start/End: Complemental strand, 16395662 - 16395613
Alignment:
Q  342 ctaattacaatgatctaacggtttggatagattggagccaaaaaagtagg 391  Q
    ||||||||||||||||||||||  ||||| | ||||||||||||||||||    
T  16395662 ctaattacaatgatctaacggtcaggataaaatggagccaaaaaagtagg 16395613  T

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Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 448 - 485
Target Start/End: Complemental strand, 38684900 - 38684863
Alignment:
Q  448 actagaacgccgacccgtgcgccgcacgggtcttatga 485  Q
    |||||| |||||||||||||||||||||||||||||||    
T  38684900 actagatcgccgacccgtgcgccgcacgggtcttatga 38684863  T

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Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 447 - 479
Target Start/End: Original strand, 9885367 - 9885399
Alignment:
Q  447 aactagaacgccgacccgtgcgccgcacgggtc 479  Q
    |||||||||||||||||||||||||||||||||    
T  9885367 aactagaacgccgacccgtgcgccgcacgggtc 9885399  T

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Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 447 - 483
Target Start/End: Complemental strand, 32721359 - 32721323
Alignment:
Q  447 aactagaacgccgacccgtgcgccgcacgggtcttat 483  Q
    |||||||||||||||||||||||||||| ||||||||    
T  32721359 aactagaacgccgacccgtgcgccgcacaggtcttat 32721323  T

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Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 448 - 479
Target Start/End: Complemental strand, 4970083 - 4970052
Alignment:
Q  448 actagaacgccgacccgtgcgccgcacgggtc 479  Q
    ||||||||||||||||||||||||||||||||    
T  4970083 actagaacgccgacccgtgcgccgcacgggtc 4970052  T

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Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 447 - 485
Target Start/End: Original strand, 43418199 - 43418237
Alignment:
Q  447 aactagaacgccgacccgtgcgccgcacgggtcttatga 485  Q
    |||||||||||||||||||||||||||| ||||| ||||    
T  43418199 aactagaacgccgacccgtgcgccgcacaggtctaatga 43418237  T

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Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 296 - 448
Target Start/End: Complemental strand, 765657 - 765505
Alignment:
Q  296 ttttcaatgagtgagatttgatc-aacggctgatatgttaacctcctctaattacaatgatctaacggtttggatagattggagccaaaaaagtaggttt 394  Q
    ||||||| ||||| |||||| || |||||||||| || ||| || | |||||||||| ||||||||| |  ||||| | |||||||||||||||||| ||    
T  765657 ttttcaaagagtgtgatttggtctaacggctgatgtgctaatcttc-ctaattacaaggatctaacgatcaggataaaatggagccaaaaaagtagggtt 765559  T
Q  395 aatgttaggaaattagggtaagcattactgctaggattagatataaaggataaa 448  Q
    |  | | || ||| |||||  ||||   ||||| ||||| ||||||||||||||    
T  765558 agaggttggcaatcagggtttgcatgtttgctacgattaaatataaaggataaa 765505  T

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Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 446 - 479
Target Start/End: Complemental strand, 23830945 - 23830912
Alignment:
Q  446 aaactagaacgccgacccgtgcgccgcacgggtc 479  Q
    ||||||||||||||||||||||| ||||||||||    
T  23830945 aaactagaacgccgacccgtgcgtcgcacgggtc 23830912  T

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Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 448 - 485
Target Start/End: Complemental strand, 34310378 - 34310341
Alignment:
Q  448 actagaacgccgacccgtgcgccgcacgggtcttatga 485  Q
    |||||| | |||||||||||||||||||||||||||||    
T  34310378 actagatctccgacccgtgcgccgcacgggtcttatga 34310341  T

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Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 373 - 446
Target Start/End: Complemental strand, 38681209 - 38681136
Alignment:
Q  373 ttggagccaaaaaagtaggtttaatgttaggaaattagggtaagcattactgctaggattagatataaaggata 446  Q
    |||||||||||||| |||| |||  |||  | || ||||||||||||   ||||||||||||||||||||||||    
T  38681209 ttggagccaaaaaattaggattagggtttagcaaatagggtaagcatgtttgctaggattagatataaaggata 38681136  T

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Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 373 - 445
Target Start/End: Complemental strand, 18646022 - 18645950
Alignment:
Q  373 ttggagccaaaaaagtaggtttaatgttaggaaattagggtaagcattactgctaggattagatataaaggat 445  Q
    |||||||||||||  |||| |||  |||| ||||||||||||| |||||||||||||||||||||||||||||    
T  18646022 ttggagccaaaaacttaggattagggttaagaaattagggtaaacattactgctaggattagatataaaggat 18645950  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 423 - 485
Target Start/End: Original strand, 20910732 - 20910790
Alignment:
Q  423 tgctaggattagatataaaggataaactagaacgccgacccgtgcgccgcacgggtcttatga 485  Q
    ||||||||||||||||||| ||    |||||||||||||||||||||||||||||||||||||    
T  20910732 tgctaggattagatataaaaga----ctagaacgccgacccgtgcgccgcacgggtcttatga 20910790  T

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Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 423 - 485
Target Start/End: Original strand, 20925180 - 20925238
Alignment:
Q  423 tgctaggattagatataaaggataaactagaacgccgacccgtgcgccgcacgggtcttatga 485  Q
    ||||||||||||||||||| ||    |||||||||||||||||||||||||||||||||||||    
T  20925180 tgctaggattagatataaaaga----ctagaacgccgacccgtgcgccgcacgggtcttatga 20925238  T

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Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 373 - 442
Target Start/End: Complemental strand, 8840722 - 8840653
Alignment:
Q  373 ttggagccaaaaaagtaggtttaatgttaggaaattagggtaagcattactgctaggattagatataaag 442  Q
    |||||||| ||||| ||||||||| ||| || |||||||||||||||   ||||||||||||||||||||    
T  8840722 ttggagccgaaaaaataggtttaaggtttggcaattagggtaagcatgtttgctaggattagatataaag 8840653  T

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Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 405 - 445
Target Start/End: Complemental strand, 34008661 - 34008621
Alignment:
Q  405 aattagggtaagcattactgctaggattagatataaaggat 445  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  34008661 aattagggtaagcattactgctaggattaaatataaaggat 34008621  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 448 - 485
Target Start/End: Original strand, 31661143 - 31661180
Alignment:
Q  448 actagaacgccgacccgtgcgccgcacgggtcttatga 485  Q
    |||||||||| |||||||||||||||| ||||||||||    
T  31661143 actagaacgcggacccgtgcgccgcacaggtcttatga 31661180  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 447 - 483
Target Start/End: Complemental strand, 7018715 - 7018679
Alignment:
Q  447 aactagaacgccgacccgtgcgccgcacgggtcttat 483  Q
    |||||||||| |||||||||||||||| |||||||||    
T  7018715 aactagaacgtcgacccgtgcgccgcatgggtcttat 7018679  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 447 - 479
Target Start/End: Complemental strand, 26846262 - 26846230
Alignment:
Q  447 aactagaacgccgacccgtgcgccgcacgggtc 479  Q
    ||||||||||||||||||||| |||||||||||    
T  26846262 aactagaacgccgacccgtgcaccgcacgggtc 26846230  T

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Target: scaffold0192 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0192
Description:

Target: scaffold0192; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 446 - 485
Target Start/End: Original strand, 19119 - 19158
Alignment:
Q  446 aaactagaacgccgacccgtgcgccgcacgggtcttatga 485  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  19119 aaactagaacgccgatccgtgcgccgcacgggtcttatga 19158  T

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Target: scaffold0790 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0790
Description:

Target: scaffold0790; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 447 - 485
Target Start/End: Complemental strand, 4002 - 3964
Alignment:
Q  447 aactagaacgccgacccgtgcgccgcacgggtcttatga 485  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  4002 aactagatcgccgacccgtgcgccgcacgggtcttatga 3964  T

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Target: scaffold0188 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 448 - 481
Target Start/End: Original strand, 28312 - 28345
Alignment:
Q  448 actagaacgccgacccgtgcgccgcacgggtctt 481  Q
    ||||||||||||||||||||||||||||||||||    
T  28312 actagaacgccgacccgtgcgccgcacgggtctt 28345  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 446 - 483
Target Start/End: Complemental strand, 37340418 - 37340381
Alignment:
Q  446 aaactagaacgccgacccgtgcgccgcacgggtcttat 483  Q
    |||||||||||||||||||||| |||||||||||||||    
T  37340418 aaactagaacgccgacccgtgccccgcacgggtcttat 37340381  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 450 - 485
Target Start/End: Complemental strand, 6702149 - 6702114
Alignment:
Q  450 tagaacgccgacccgtgcgccgcacgggtcttatga 485  Q
    |||||||||||||||||| |||||||||||||||||    
T  6702149 tagaacgccgacccgtgcaccgcacgggtcttatga 6702114  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 373 - 446
Target Start/End: Complemental strand, 4077910 - 4077837
Alignment:
Q  373 ttggagccaaaaaagtaggtttaatgttaggaaattagggtaagcattactgctaggattagatataaaggata 446  Q
    ||||||||||||||  ||| |||  ||| || ||||||| |||||||   ||||||||||||||||||||||||    
T  4077910 ttggagccaaaaaataaggattagggtttggcaattaggataagcatgtttgctaggattagatataaaggata 4077837  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 448 - 485
Target Start/End: Original strand, 11298471 - 11298508
Alignment:
Q  448 actagaacgccgacccgtgcgccgcacgggtcttatga 485  Q
    |||||||||||||||||||||||| | |||||||||||    
T  11298471 actagaacgccgacccgtgcgccgtatgggtcttatga 11298508  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 448 - 481
Target Start/End: Complemental strand, 26113683 - 26113650
Alignment:
Q  448 actagaacgccgacccgtgcgccgcacgggtctt 481  Q
    |||||||||| |||||||||||||||||||||||    
T  26113683 actagaacgctgacccgtgcgccgcacgggtctt 26113650  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 373 - 445
Target Start/End: Complemental strand, 40946782 - 40946710
Alignment:
Q  373 ttggagccaaaaaagtaggtttaatgttaggaaattagggtaagcattactgctaggattagatataaaggat 445  Q
    |||||||||||||| || | |||  ||| || ||||||||||| |||   |||||||||||||||||||||||    
T  40946782 ttggagccaaaaaattaagattagggtttggcaattagggtaaacatgtttgctaggattagatataaaggat 40946710  T

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Target: scaffold0096 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 287 - 391
Target Start/End: Original strand, 32812 - 32916
Alignment:
Q  287 gtgtatcaattttcaatgagtgagatttgatca-acggctgatatgttaacctcctctaattacaatgatctaacggtttggatagattggagccaaaaa 385  Q
    |||| ||| |||| || ||||| |||||||||  ||||||||| || ||| || || ||| |||||||||||||||||  ||||| | ||||||||||||    
T  32812 gtgtttcattttttaaagagtgtgatttgatctgacggctgatgtgctaatcttct-taaatacaatgatctaacggtcaggataaaatggagccaaaaa 32910  T
Q  386 agtagg 391  Q
    ||||||    
T  32911 agtagg 32916  T

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