View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19690_low_6 (Length: 486)
Name: NF19690_low_6
Description: NF19690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19690_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 1 - 471
Target Start/End: Complemental strand, 44689280 - 44688809
Alignment:
| Q |
1 |
cacaccccataccaccaccacccattactaaagtttgcaactttccaactttcttaccaccttcgtcatgatacaaaacttgcttatctaaactagaact |
100 |
Q |
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| T |
44689280 |
cacaccccataccaccaccacccattactaaagtttgcaactttccaactttcttaccaccttcgtcatgatacaaaacttgcttatctaaactagaact |
44689181 |
T |
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| Q |
101 |
tgaaaacagttctctcattgaaggtgttgnnnnnnncttgtgaaatttttgttctatttcttcttgatgatgattcttaagaagtggtgcagnnnnnnna |
200 |
Q |
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| T |
44689180 |
tgaaaacagttctctcattgaaggtgttgtttttttcttgtgaaatttttgttctatttcttcttgatgatgattcttaagaagtggtgcagttttttta |
44689081 |
T |
|
| Q |
201 |
tgtcttggacttgcaagtgttctaggaaggtggtgattgagttcctgttcagaagaagattccattgagtgtggaaggaaagaacttggaattggtgcac |
300 |
Q |
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| T |
44689080 |
tgtcttggacttgcaagtgttctaggaaggtggtgattgagttcttgttcagaagaagattccattgagtgtggaaggaaagaacttggaattggtgcac |
44688981 |
T |
|
| Q |
301 |
tatagcttcttagtaacannnnnnnnnnnngaagtttagaaagaaagtatatgtatatgatgctaagaaataaatggtggttggaagtttaaggatgcgg |
400 |
Q |
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| T |
44688980 |
tatagcttcttagtaacattttttctttttgaagtttagaaagaaagtatatgtatatgatgctaagaaataaatggtggttggaagtttaaggatgcgg |
44688881 |
T |
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| Q |
401 |
tagctagggagtgaaaagtgttgaagtaggaaagaaaaatgatagtggaatagaaagac-aagagaaaaaga |
471 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |
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| T |
44688880 |
tagctagggagtgaaaagtgttgaagtaggaaagaaaaatgatagtagaatagaaagacaaagagaaaaaga |
44688809 |
T |
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